Hb_011174_090

Information

Type -
Description -
Location Contig11174: 42371-49599
Sequence    

Annotation

kegg
ID rcu:RCOM_1677350
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_012070468.1
description PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
swissprot
ID Q6PIW4
description Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2
trembl
ID A0A067LG63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10128 PE=3 SV=1
Gene Ontology
ID GO:0005524
description fidgetin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03573: 42509-45684 , PASA_asmbl_03574: 45707-46125 , PASA_asmbl_03575: 46150-46898 , PASA_asmbl_03576: 48361-49595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_090 0.0 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
2 Hb_004994_040 0.0448082636 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
3 Hb_007592_030 0.0757390717 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_002304_090 0.0768399385 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
5 Hb_009627_010 0.0773720442 - - Protein dom-3, putative [Ricinus communis]
6 Hb_007188_070 0.0776630566 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
7 Hb_000109_210 0.078886842 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_000523_050 0.0809984038 - - microsomal glutathione s-transferase, putative [Ricinus communis]
9 Hb_000618_030 0.0818030557 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
10 Hb_000868_060 0.0827674292 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
11 Hb_002888_070 0.0830234257 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
12 Hb_001488_410 0.0846006059 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
13 Hb_000470_070 0.0846622055 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
14 Hb_002078_020 0.0864440182 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_001172_010 0.0867996062 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
16 Hb_003464_020 0.0871562544 - - srpk, putative [Ricinus communis]
17 Hb_000498_010 0.0903713574 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001444_010 0.0904037402 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
19 Hb_000208_210 0.0908211234 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
20 Hb_003813_040 0.0914866202 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_090 Hb_011174_090 Hb_004994_040 Hb_004994_040 Hb_011174_090--Hb_004994_040 Hb_007592_030 Hb_007592_030 Hb_011174_090--Hb_007592_030 Hb_002304_090 Hb_002304_090 Hb_011174_090--Hb_002304_090 Hb_009627_010 Hb_009627_010 Hb_011174_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_011174_090--Hb_007188_070 Hb_000109_210 Hb_000109_210 Hb_011174_090--Hb_000109_210 Hb_004994_040--Hb_007592_030 Hb_000618_030 Hb_000618_030 Hb_004994_040--Hb_000618_030 Hb_004994_040--Hb_002304_090 Hb_001444_010 Hb_001444_010 Hb_004994_040--Hb_001444_010 Hb_004994_040--Hb_009627_010 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_002304_090--Hb_009627_010 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_009627_010--Hb_000618_030 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_003362_040 Hb_003362_040 Hb_007188_070--Hb_003362_040 Hb_000645_120 Hb_000645_120 Hb_007188_070--Hb_000645_120 Hb_007188_070--Hb_009627_010 Hb_140171_010 Hb_140171_010 Hb_007188_070--Hb_140171_010 Hb_002684_040 Hb_002684_040 Hb_000109_210--Hb_002684_040 Hb_000470_070 Hb_000470_070 Hb_000109_210--Hb_000470_070 Hb_000333_060 Hb_000333_060 Hb_000109_210--Hb_000333_060 Hb_019654_040 Hb_019654_040 Hb_000109_210--Hb_019654_040 Hb_000983_150 Hb_000983_150 Hb_000109_210--Hb_000983_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00651 1.34983 2.19299 1.68057 3.2563 4.11882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14385 0.935297 2.09336 2.12521 1.06058

CAGE analysis