Hb_003813_040

Information

Type -
Description -
Location Contig3813: 15829-19785
Sequence    

Annotation

kegg
ID rcu:RCOM_1553570
description hypothetical protein
nr
ID XP_012077988.1
description PREDICTED: elongator complex protein 5 [Jatropha curcas]
swissprot
ID F4IQJ2
description Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1 SV=1
trembl
ID B9S3Q0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1553570 PE=4 SV=1
Gene Ontology
ID GO:0033588
description elongator complex protein 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38623: 15936-19823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_040 0.0 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
2 Hb_000189_330 0.0636514568 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
3 Hb_001377_320 0.0650075995 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
4 Hb_007592_030 0.0653167725 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_002686_250 0.0721729438 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
6 Hb_002078_020 0.0733438241 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
7 Hb_000777_050 0.0744275248 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
8 Hb_002997_080 0.0746999638 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
9 Hb_000523_050 0.0749314683 - - microsomal glutathione s-transferase, putative [Ricinus communis]
10 Hb_000395_020 0.0762115507 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
11 Hb_006620_020 0.0767589629 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_007416_300 0.0773062875 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
13 Hb_000498_010 0.0774548347 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000141_250 0.0780570156 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
15 Hb_000853_230 0.0787536277 - - syntaxin, putative [Ricinus communis]
16 Hb_001926_030 0.0789035254 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_003029_030 0.0794643859 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_131646_010 0.0796576215 - - protein arginine n-methyltransferase, putative [Ricinus communis]
19 Hb_004994_040 0.079775898 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
20 Hb_005288_150 0.0801773531 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_040 Hb_003813_040 Hb_000189_330 Hb_000189_330 Hb_003813_040--Hb_000189_330 Hb_001377_320 Hb_001377_320 Hb_003813_040--Hb_001377_320 Hb_007592_030 Hb_007592_030 Hb_003813_040--Hb_007592_030 Hb_002686_250 Hb_002686_250 Hb_003813_040--Hb_002686_250 Hb_002078_020 Hb_002078_020 Hb_003813_040--Hb_002078_020 Hb_000777_050 Hb_000777_050 Hb_003813_040--Hb_000777_050 Hb_001621_170 Hb_001621_170 Hb_000189_330--Hb_001621_170 Hb_000189_330--Hb_001377_320 Hb_001418_040 Hb_001418_040 Hb_000189_330--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000189_330--Hb_001143_180 Hb_000395_020 Hb_000395_020 Hb_000189_330--Hb_000395_020 Hb_002022_060 Hb_002022_060 Hb_001377_320--Hb_002022_060 Hb_007904_120 Hb_007904_120 Hb_001377_320--Hb_007904_120 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_131646_010 Hb_131646_010 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_002078_020--Hb_001926_030 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3849 21.0024 32.1644 22.5715 39.6606 38.3524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1925 17.0201 22.9341 15.9888 14.5994

CAGE analysis