Hb_001418_040

Information

Type -
Description -
Location Contig1418: 69895-85061
Sequence    

Annotation

kegg
ID rcu:RCOM_1302160
description mannosyl-oligosaccharide alpha-1,2-mannosidase, putative (EC:3.2.1.113)
nr
ID XP_012085016.1
description PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
swissprot
ID Q9C512
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1
trembl
ID A0A067JSU5
description alpha-1,2-Mannosidase OS=Jatropha curcas GN=JCGZ_22081 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mannosyl-oligosaccharide -alpha-mannosidase mns1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11209: 70089-85028 , PASA_asmbl_11210: 79362-79603 , PASA_asmbl_11211: 83272-83394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001418_040 0.0 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
2 Hb_008556_030 0.0693121985 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
3 Hb_006960_050 0.0707886031 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
4 Hb_000576_050 0.0721539549 - - Kinase superfamily protein [Theobroma cacao]
5 Hb_000101_380 0.0759836431 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
6 Hb_000414_050 0.0771287436 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
7 Hb_002836_140 0.0786933799 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
8 Hb_002042_030 0.0789732384 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
9 Hb_002928_010 0.0793675264 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
10 Hb_000189_330 0.0795341051 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
11 Hb_002311_070 0.0803080157 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
12 Hb_000776_100 0.0805604949 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
13 Hb_027472_120 0.0806797903 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002093_030 0.0839494197 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_000915_080 0.084329491 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
16 Hb_003878_110 0.0858848267 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
17 Hb_001143_180 0.0868631175 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
18 Hb_000922_020 0.0868785378 - - protein binding protein, putative [Ricinus communis]
19 Hb_000243_160 0.0879532053 - - glutaredoxin-1, grx1, putative [Ricinus communis]
20 Hb_058972_010 0.0896215271 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001418_040 Hb_001418_040 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_002836_140 Hb_002836_140 Hb_001418_040--Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000915_080 Hb_000915_080 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_002783_170 Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_000414_050--Hb_000776_100 Hb_002042_030 Hb_002042_030 Hb_000414_050--Hb_002042_030 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_000414_050--Hb_002836_140 Hb_000414_050--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002836_140--Hb_007951_040 Hb_002836_140--Hb_000915_080 Hb_002836_140--Hb_002783_170 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6241 11.9151 23.1044 15.0727 24.1991 18.734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7855 11.7343 6.67084 10.5706 10.6717

CAGE analysis