Hb_007951_040

Information

Type -
Description -
Location Contig7951: 36880-41189
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06160g
description POPTRDRAFT_817068; signal peptidase family protein
nr
ID XP_002303254.1
description signal peptidase family protein [Populus trichocarpa]
swissprot
ID Q9WTR7
description Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3
trembl
ID B9GWC4
description Signal peptidase I OS=Populus trichocarpa GN=POPTR_0003s06160g PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptidase complex catalytic subunit sec11a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58505: 36919-41218
cDNA
(Sanger)
(ID:Location)		 008_O12.ab1: 36938-41037 , 031_L16.ab1: 36938-41149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_040 0.0 - - signal peptidase family protein [Populus trichocarpa]
2 Hb_002836_140 0.0606432509 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
3 Hb_002783_170 0.0728951652 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
4 Hb_000776_100 0.0812822233 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
5 Hb_003688_090 0.0826543459 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
6 Hb_003038_120 0.0856209009 - - rer1 protein, putative [Ricinus communis]
7 Hb_000915_080 0.0869539685 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_000751_030 0.0903972826 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
9 Hb_001501_080 0.0904152203 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
10 Hb_000101_380 0.0915033628 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
11 Hb_000445_050 0.0918271691 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
12 Hb_000414_050 0.0926816236 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
13 Hb_002398_030 0.0940886659 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_058999_030 0.0952256511 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
15 Hb_009049_020 0.0958331571 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
16 Hb_003897_040 0.0987356288 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
17 Hb_001418_040 0.0991144543 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
18 Hb_001227_130 0.0994253691 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
19 Hb_000392_230 0.0997072097 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000138_130 0.1014167873 - - hypothetical protein JCGZ_25540 [Jatropha curcas]

Gene co-expression network

sample Hb_007951_040 Hb_007951_040 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080 Hb_002836_140--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_002836_140--Hb_008556_030 Hb_000414_050 Hb_000414_050 Hb_002836_140--Hb_000414_050 Hb_002836_140--Hb_002783_170 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_002783_170--Hb_000414_050 Hb_002783_170--Hb_000776_100 Hb_002783_170--Hb_000915_080 Hb_000101_380 Hb_000101_380 Hb_002783_170--Hb_000101_380 Hb_000776_100--Hb_000414_050 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000776_100--Hb_000101_380 Hb_010150_020 Hb_010150_020 Hb_003688_090--Hb_010150_020 Hb_009049_020 Hb_009049_020 Hb_003688_090--Hb_009049_020 Hb_002073_190 Hb_002073_190 Hb_003688_090--Hb_002073_190 Hb_000035_110 Hb_000035_110 Hb_003688_090--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_003688_090--Hb_002398_030 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_003038_120--Hb_006588_070 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_000915_080--Hb_000414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1378 10.9262 32.4288 34.1248 28.6557 30.5602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.471 14.5986 9.15076 14.6788 13.4509

CAGE analysis