Hb_000138_130

Information

Type -
Description -
Location Contig138: 237511-242279
Sequence    

Annotation

kegg
ID vvi:100241865
description DNA polymerase delta small subunit
nr
ID KDP24624.1
description hypothetical protein JCGZ_25540 [Jatropha curcas]
swissprot
ID O48520
description DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2
trembl
ID A0A067JYL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25540 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase delta small subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10489: 237583-240626 , PASA_asmbl_10490: 241171-241376 , PASA_asmbl_10491: 241397-266242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_130 0.0 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
2 Hb_000776_100 0.0609769387 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
3 Hb_000414_050 0.0683282634 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
4 Hb_000525_100 0.0783949687 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
5 Hb_002615_120 0.0808108775 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
6 Hb_002928_010 0.0822011451 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
7 Hb_002042_030 0.0827708569 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
8 Hb_007441_020 0.0828133156 - - Rab6 [Hevea brasiliensis]
9 Hb_006588_070 0.0856838446 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
10 Hb_003994_140 0.0877582657 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009270_040 0.0879467463 - - -
12 Hb_000751_030 0.0899850396 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
13 Hb_003878_110 0.0901773405 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
14 Hb_003038_120 0.0903453477 - - rer1 protein, putative [Ricinus communis]
15 Hb_002836_140 0.090853554 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
16 Hb_000260_680 0.0911615728 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
17 Hb_003096_060 0.0918633204 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
18 Hb_032202_080 0.092033721 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_011310_130 0.0923270261 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
20 Hb_001418_040 0.092342862 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000138_130 Hb_000138_130 Hb_000776_100 Hb_000776_100 Hb_000138_130--Hb_000776_100 Hb_000414_050 Hb_000414_050 Hb_000138_130--Hb_000414_050 Hb_000525_100 Hb_000525_100 Hb_000138_130--Hb_000525_100 Hb_002615_120 Hb_002615_120 Hb_000138_130--Hb_002615_120 Hb_002928_010 Hb_002928_010 Hb_000138_130--Hb_002928_010 Hb_002042_030 Hb_002042_030 Hb_000138_130--Hb_002042_030 Hb_000776_100--Hb_000414_050 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_000414_050--Hb_002042_030 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_000414_050--Hb_000915_080 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_032202_080 Hb_032202_080 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_008568_020 Hb_008568_020 Hb_002615_120--Hb_008568_020 Hb_002615_120--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_039605_010 Hb_039605_010 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61164 6.70242 14.4396 7.65344 9.53679 12.496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64443 6.12622 3.57338 4.99701 5.2516

CAGE analysis