Hb_001301_220

Information

Type -
Description -
Location Contig1301: 155595-163216
Sequence    

Annotation

kegg
ID rcu:RCOM_0584970
description hypothetical protein
nr
ID XP_012070806.1
description PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
swissprot
ID Q94AM9
description Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana GN=CID4 PE=2 SV=1
trembl
ID A0A067L3P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00877 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09030: 155620-155811 , PASA_asmbl_09031: 155947-157300 , PASA_asmbl_09032: 157336-158689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_220 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
2 Hb_001832_130 0.0585445735 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
3 Hb_143629_150 0.0711428209 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
4 Hb_001077_030 0.0738516152 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
5 Hb_002042_030 0.0748624489 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_005053_010 0.0769075888 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
7 Hb_000718_070 0.0778541628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000960_050 0.0801062114 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
9 Hb_003125_070 0.0804528795 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
10 Hb_001307_080 0.0819338427 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
11 Hb_000414_050 0.0829258073 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
12 Hb_000679_340 0.0844935873 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
13 Hb_003638_090 0.0858219849 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
14 Hb_005965_030 0.0863624163 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
15 Hb_003096_060 0.086585974 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
16 Hb_002092_100 0.0870149843 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
17 Hb_000086_560 0.0871449411 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
18 Hb_001405_190 0.0880414606 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
19 Hb_000007_280 0.0881533898 - - hypothetical protein VITISV_000066 [Vitis vinifera]
20 Hb_004631_190 0.0887963752 - - PREDICTED: protein SCAI homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001301_220 Hb_001301_220 Hb_001832_130 Hb_001832_130 Hb_001301_220--Hb_001832_130 Hb_143629_150 Hb_143629_150 Hb_001301_220--Hb_143629_150 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_002042_030 Hb_002042_030 Hb_001301_220--Hb_002042_030 Hb_005053_010 Hb_005053_010 Hb_001301_220--Hb_005053_010 Hb_000718_070 Hb_000718_070 Hb_001301_220--Hb_000718_070 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_003125_070 Hb_003125_070 Hb_001832_130--Hb_003125_070 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180 Hb_005588_090 Hb_005588_090 Hb_143629_150--Hb_005588_090 Hb_001089_070 Hb_001089_070 Hb_143629_150--Hb_001089_070 Hb_143629_150--Hb_005053_010 Hb_000318_120 Hb_000318_120 Hb_143629_150--Hb_000318_120 Hb_032202_120 Hb_032202_120 Hb_143629_150--Hb_032202_120 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_160459_040 Hb_160459_040 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83879 7.21429 9.70113 6.08714 11.1632 8.92927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26962 3.46899 2.40721 5.46509 4.10801

CAGE analysis