Hb_000922_020

Information

Type -
Description -
Location Contig922: 42122-47972
Sequence    

Annotation

kegg
ID rcu:RCOM_1510800
description protein binding protein, putative
nr
ID XP_002511411.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8GYT9
description E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2
trembl
ID B9RB36
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1510800 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase sis3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62472: 46940-47257 , PASA_asmbl_62473: 45647-46915 , PASA_asmbl_62474: 43948-44137 , PASA_asmbl_62475: 42153-47705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001405_190 0.0641416498 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_005288_080 0.0656445704 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000679_340 0.0673996818 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
5 Hb_022256_060 0.0704188741 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
6 Hb_032202_080 0.071266909 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
7 Hb_001077_030 0.0734050177 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
8 Hb_008887_020 0.0738858907 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
9 Hb_004912_030 0.0750238601 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
10 Hb_007929_080 0.0752623344 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
11 Hb_002311_310 0.0755570574 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
12 Hb_004631_190 0.0767294027 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
13 Hb_000599_080 0.0770018971 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
14 Hb_001140_030 0.0783571568 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
15 Hb_000230_090 0.0807219667 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
16 Hb_001005_030 0.0807897671 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_027472_120 0.0811554338 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_032264_060 0.0819126743 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
19 Hb_001952_120 0.0823093865 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
20 Hb_002042_030 0.0831361025 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000922_020 Hb_000922_020 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_005288_080--Hb_000525_100 Hb_005288_080--Hb_000679_340 Hb_000264_070 Hb_000264_070 Hb_005288_080--Hb_000264_070 Hb_005288_080--Hb_001077_030 Hb_000156_160 Hb_000156_160 Hb_005288_080--Hb_000156_160 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5789 16.7487 20.2347 12.1426 23.212 16.5337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34177 8.4215 7.84515 8.90133 14.4655

CAGE analysis