Hb_138435_010

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig138435: 11357-15283
Sequence    

Annotation

kegg
ID rcu:RCOM_0669570
description brg-1 associated factor, putative
nr
ID XP_002520558.1
description brg-1 associated factor, putative [Ricinus communis]
swissprot
ID O74503
description Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
trembl
ID B9S3I9
description Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_0669570 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swib complex baf60b domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10539: 11256-15268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138435_010 0.0 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
2 Hb_001153_210 0.0529780313 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
3 Hb_003186_020 0.0588475396 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
4 Hb_031284_010 0.0620564167 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_000847_080 0.0623743648 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
6 Hb_032202_080 0.062731554 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
7 Hb_001226_150 0.0642198898 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
8 Hb_000115_280 0.0662545327 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
9 Hb_000373_080 0.0664274549 - - PREDICTED: serine decarboxylase [Jatropha curcas]
10 Hb_000390_230 0.0667705446 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
11 Hb_000457_230 0.067517258 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_008059_010 0.0677718509 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
13 Hb_000254_100 0.0680469416 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_001005_030 0.0701540925 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
15 Hb_002615_120 0.0727662187 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
16 Hb_000224_150 0.0736280126 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
17 Hb_000836_410 0.0739245403 - - sec10, putative [Ricinus communis]
18 Hb_000567_070 0.0752286778 - - autophagy protein, putative [Ricinus communis]
19 Hb_170416_010 0.0753746279 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
20 Hb_004096_240 0.0754482819 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]

Gene co-expression network

sample Hb_138435_010 Hb_138435_010 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_138435_010--Hb_003186_020 Hb_031284_010 Hb_031284_010 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_032202_080 Hb_032202_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_031284_010--Hb_000115_280 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_000847_080--Hb_001153_210 Hb_000847_080--Hb_003186_020 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_001226_150--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_001226_150--Hb_007007_120 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1592 22.039 40.668 18.9256 24.1182 25.2523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7147 14.811 15.7618 18.9149 25.2223

CAGE analysis