Hb_001405_190

Information

Type -
Description -
Location Contig1405: 225003-235013
Sequence    

Annotation

kegg
ID rcu:RCOM_0458390
description NADH-ubiquinone oxidoreductase, putative (EC:1.6.5.3)
nr
ID XP_012086440.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q43644
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067JPL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22539 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10979: 225073-225254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_190 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
2 Hb_002615_120 0.055365448 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
3 Hb_143766_110 0.0588834169 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
4 Hb_007929_080 0.06026951 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
5 Hb_004631_190 0.0608862336 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
6 Hb_000922_020 0.0641416498 - - protein binding protein, putative [Ricinus communis]
7 Hb_010362_030 0.0649135387 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
8 Hb_000264_070 0.0689213969 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
9 Hb_008568_020 0.0689484544 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
10 Hb_032202_080 0.0699383815 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_001377_110 0.0702152447 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
12 Hb_001140_030 0.0712786685 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
13 Hb_000317_510 0.0719404281 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
14 Hb_000457_230 0.0722464981 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
15 Hb_000679_340 0.0739542165 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
16 Hb_000836_410 0.0740297731 - - sec10, putative [Ricinus communis]
17 Hb_000230_090 0.0749718962 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
18 Hb_000525_100 0.0755779308 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
19 Hb_098209_010 0.0764648839 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
20 Hb_001005_030 0.077197287 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001405_190 Hb_001405_190 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030 Hb_008568_020 Hb_008568_020 Hb_002615_120--Hb_008568_020 Hb_032202_080 Hb_032202_080 Hb_002615_120--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_143766_110--Hb_010362_030 Hb_143766_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35261 5.90717 7.34923 4.37016 6.10405 5.27136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08083 2.40238 2.58166 3.25759 4.15331

CAGE analysis