Hb_000661_020

Information

Type -
Description -
Location Contig661: 12161-12879
Sequence    

Annotation

kegg
ID brp:103844217
description zinc finger CCCH domain-containing protein 13
nr
ID CDX72155.1
description BnaC08g27190D [Brassica napus]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID F6HS63
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00730 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_020 0.0 - - BnaC08g27190D [Brassica napus]
2 Hb_003929_140 0.0646130366 - - DNA binding protein, putative [Ricinus communis]
3 Hb_004631_190 0.0747685552 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
4 Hb_002739_130 0.0769563564 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
5 Hb_016734_090 0.0821170386 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
6 Hb_000922_020 0.0835473247 - - protein binding protein, putative [Ricinus communis]
7 Hb_007929_080 0.0849057705 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
8 Hb_005188_060 0.0869421436 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_002092_100 0.0879094234 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
10 Hb_147505_010 0.0898159532 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
11 Hb_000230_430 0.0898898327 - - catalytic, putative [Ricinus communis]
12 Hb_000156_160 0.091386804 - - PREDICTED: urease accessory protein G [Jatropha curcas]
13 Hb_001405_190 0.0938275964 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
14 Hb_105641_010 0.0950108165 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_001952_120 0.0951698819 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
16 Hb_002571_030 0.0954352369 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
17 Hb_011918_050 0.0956394575 - - -
18 Hb_028872_120 0.0966440342 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
19 Hb_000963_130 0.0973304057 - - RNA m5u methyltransferase, putative [Ricinus communis]
20 Hb_000023_320 0.098622291 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000661_020 Hb_000661_020 Hb_003929_140 Hb_003929_140 Hb_000661_020--Hb_003929_140 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_002739_130 Hb_002739_130 Hb_000661_020--Hb_002739_130 Hb_016734_090 Hb_016734_090 Hb_000661_020--Hb_016734_090 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080 Hb_002022_070 Hb_002022_070 Hb_003929_140--Hb_002022_070 Hb_000028_510 Hb_000028_510 Hb_003929_140--Hb_000028_510 Hb_004629_010 Hb_004629_010 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_001231_030 Hb_001231_030 Hb_003929_140--Hb_001231_030 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_006452_160 Hb_006452_160 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_002739_130--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_016734_090--Hb_011918_050 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_016734_090--Hb_000563_330 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4674 14.2713 13.465 6.84874 17.7188 11.5468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52634 3.85386 5.21272 6.26 8.39476

CAGE analysis