Hb_000563_330

Information

Type -
Description -
Location Contig563: 198755-200370
Sequence    

Annotation

kegg
ID rcu:RCOM_0682250
description DAG protein, chloroplast precursor, putative
nr
ID XP_002516969.1
description DAG protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q84JZ6
description Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana GN=MORF3 PE=1 SV=1
trembl
ID B9RTA0
description DAG protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0682250 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dag chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48916: 198787-200365 , PASA_asmbl_48917: 198487-199103
cDNA
(Sanger)
(ID:Location)		 051_G13.ab1: 198787-199871

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_330 0.0 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_006452_160 0.0578565476 - - structural constituent of ribosome, putative [Ricinus communis]
3 Hb_002739_130 0.060241518 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
4 Hb_003994_140 0.0730483588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_039605_010 0.0772948648 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_058551_010 0.0787204926 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_016734_090 0.0805811373 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
8 Hb_002928_010 0.0839112384 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
9 Hb_002157_260 0.085943683 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
10 Hb_001269_200 0.0890183354 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
11 Hb_000983_120 0.0908012211 - - cyclin-dependent protein kinase, putative [Ricinus communis]
12 Hb_002043_090 0.0925340675 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_027073_030 0.094700612 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_000679_340 0.0953443428 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
15 Hb_000525_100 0.095741989 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
16 Hb_005188_060 0.0974049639 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
17 Hb_005965_030 0.0993958507 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
18 Hb_000140_330 0.0998671778 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
19 Hb_092337_020 0.1010613067 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
20 Hb_003125_070 0.1018707435 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000563_330 Hb_000563_330 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_006452_160--Hb_002739_130 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_006452_160--Hb_016734_090 Hb_002739_130--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_002739_130--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_003994_140--Hb_039605_010 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_039605_010--Hb_002928_010 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_058551_010--Hb_003994_140 Hb_000173_150 Hb_000173_150 Hb_058551_010--Hb_000173_150 Hb_000069_590 Hb_000069_590 Hb_058551_010--Hb_000069_590 Hb_058551_010--Hb_039605_010 Hb_000735_050 Hb_000735_050 Hb_058551_010--Hb_000735_050 Hb_016734_090--Hb_011918_050 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_016734_090--Hb_000661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.0568 74.6224 93.837 29.4042 80.0158 68.3727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.88 39.4094 19.3362 24.7725 24.1439

CAGE analysis