Hb_000735_050

Information

Type -
Description -
Location Contig735: 24591-30047
Sequence    

Annotation

kegg
ID rcu:RCOM_0379230
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_012085129.1
description PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
swissprot
ID Q9SRS9
description E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1
trembl
ID A0A067LLN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15134 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase chip-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56181: 24106-24929 , PASA_asmbl_56182: 29332-30125 , PASA_asmbl_56183: 29544-30125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_050 0.0 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
2 Hb_000069_590 0.0542276374 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
3 Hb_003994_140 0.0893502723 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000718_070 0.0910696287 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000186_330 0.0972972928 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
6 Hb_000336_110 0.0979791047 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
7 Hb_001832_130 0.0985948744 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
8 Hb_000230_430 0.0986046409 - - catalytic, putative [Ricinus communis]
9 Hb_001301_220 0.1003000085 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_003125_070 0.1015923693 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
11 Hb_000173_150 0.1020770673 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
12 Hb_001077_030 0.1022143268 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
13 Hb_003746_030 0.1039192018 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
14 Hb_004631_190 0.1041168819 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
15 Hb_010053_040 0.1047466889 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
16 Hb_003894_040 0.1050670625 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_000453_040 0.1090077271 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
18 Hb_000608_350 0.1090786913 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
19 Hb_058551_010 0.1097272227 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_003680_230 0.1097372109 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]

Gene co-expression network

sample Hb_000735_050 Hb_000735_050 Hb_000069_590 Hb_000069_590 Hb_000735_050--Hb_000069_590 Hb_003994_140 Hb_003994_140 Hb_000735_050--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000735_050--Hb_000718_070 Hb_000186_330 Hb_000186_330 Hb_000735_050--Hb_000186_330 Hb_000336_110 Hb_000336_110 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130 Hb_000069_590--Hb_000186_330 Hb_000230_430 Hb_000230_430 Hb_000069_590--Hb_000230_430 Hb_000069_590--Hb_003994_140 Hb_000069_590--Hb_000718_070 Hb_000069_590--Hb_000336_110 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_003746_030 Hb_003746_030 Hb_000186_330--Hb_003746_030 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_000186_330--Hb_003994_140 Hb_000264_080 Hb_000264_080 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_001301_220 Hb_001301_220 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_003125_070 Hb_003125_070 Hb_001832_130--Hb_003125_070 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54161 9.49216 10.3206 8.29383 10.6464 8.83938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86583 3.27803 2.09595 3.73895 2.00981

CAGE analysis