Hb_001832_130

Information

Type -
Description -
Location Contig1832: 133921-141683
Sequence    

Annotation

kegg
ID rcu:RCOM_1046940
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012076930.1
description PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
swissprot
ID O22607
description WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3
trembl
ID A0A067KC97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07407 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd-40 repeat-containing protein msi4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17893: 134241-141651
cDNA
(Sanger)
(ID:Location)		 051_C15.ab1: 141348-141594

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_130 0.0 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
2 Hb_001301_220 0.0585445735 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
3 Hb_005965_030 0.0746961501 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
4 Hb_002374_320 0.0780148069 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
5 Hb_003125_070 0.0800044409 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
6 Hb_000960_050 0.0813511082 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
7 Hb_001143_180 0.0819681129 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
8 Hb_003638_090 0.0823289474 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
9 Hb_003680_230 0.0825957285 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
10 Hb_011930_080 0.082600558 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
11 Hb_118840_050 0.0851071051 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
12 Hb_001307_080 0.0876503416 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_000679_340 0.0885107983 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
14 Hb_000116_060 0.0888899594 - - plant ubiquilin, putative [Ricinus communis]
15 Hb_000406_230 0.0893669132 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
16 Hb_004631_190 0.0894457781 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
17 Hb_006658_040 0.0899586088 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
18 Hb_001077_030 0.0902695601 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
19 Hb_000648_100 0.0905789954 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
20 Hb_003096_060 0.0914491902 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_001832_130 Hb_001832_130 Hb_001301_220 Hb_001301_220 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_003125_070 Hb_003125_070 Hb_001832_130--Hb_003125_070 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180 Hb_143629_150 Hb_143629_150 Hb_001301_220--Hb_143629_150 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_002042_030 Hb_002042_030 Hb_001301_220--Hb_002042_030 Hb_005053_010 Hb_005053_010 Hb_001301_220--Hb_005053_010 Hb_000718_070 Hb_000718_070 Hb_001301_220--Hb_000718_070 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_011930_080 Hb_011930_080 Hb_002374_320--Hb_011930_080 Hb_006478_060 Hb_006478_060 Hb_002374_320--Hb_006478_060 Hb_001307_080 Hb_001307_080 Hb_002374_320--Hb_001307_080 Hb_000406_230 Hb_000406_230 Hb_002374_320--Hb_000406_230 Hb_003040_020 Hb_003040_020 Hb_002374_320--Hb_003040_020 Hb_003125_070--Hb_001301_220 Hb_000735_050 Hb_000735_050 Hb_003125_070--Hb_000735_050 Hb_003994_140 Hb_003994_140 Hb_003125_070--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_003125_070--Hb_000563_330 Hb_003125_070--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_008112_030 Hb_008112_030 Hb_000960_050--Hb_008112_030 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000960_050--Hb_000406_230 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.4814 44.4518 48.1914 27.0856 53.2045 48.5806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8061 17.593 14.5465 33.5578 14.3969

CAGE analysis