Hb_001307_080

Information

Type -
Description -
Location Contig1307: 71027-80282
Sequence    

Annotation

kegg
ID rcu:RCOM_0543280
description phosphatidylcholine acyltransferase, putative (EC:2.3.1.158)
nr
ID XP_012085264.1
description PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
swissprot
ID Q4VCM1
description Phospholipid--sterol O-acyltransferase OS=Arabidopsis thaliana GN=PSAT PE=2 SV=2
trembl
ID A0A067JRH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17650 PE=4 SV=1
Gene Ontology
ID GO:0004607
description phospholipid--sterol o-acyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09093: 72300-72524 , PASA_asmbl_09094: 72863-73975 , PASA_asmbl_09095: 74719-80429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_080 0.0 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
2 Hb_004429_160 0.062274213 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
3 Hb_000191_130 0.0674682438 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_006658_040 0.0687949908 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
5 Hb_000010_360 0.0724211361 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
6 Hb_004209_020 0.0724657349 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
7 Hb_003040_020 0.0735432576 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_001427_190 0.073850895 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
9 Hb_000960_050 0.0738516767 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
10 Hb_000406_230 0.0747885186 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
11 Hb_000914_080 0.0757943805 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_067193_010 0.0760791494 - - -
13 Hb_011930_080 0.0775534619 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
14 Hb_000856_140 0.0776922227 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
15 Hb_005965_030 0.0794886522 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
16 Hb_002374_320 0.0796883027 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
17 Hb_004785_100 0.0802625603 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007558_070 0.0804096698 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
19 Hb_004453_110 0.0808236116 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
20 Hb_001545_200 0.0813588921 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_080 Hb_001307_080 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_003040_020 Hb_003040_020 Hb_001307_080--Hb_003040_020 Hb_004429_160--Hb_000191_130 Hb_004429_160--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_004429_160--Hb_000032_010 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000191_130--Hb_000032_010 Hb_000922_140 Hb_000922_140 Hb_006658_040--Hb_000922_140 Hb_000160_350 Hb_000160_350 Hb_006658_040--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_006658_040--Hb_002157_260 Hb_002045_150 Hb_002045_150 Hb_006658_040--Hb_002045_150 Hb_005965_030 Hb_005965_030 Hb_006658_040--Hb_005965_030 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004235_080 Hb_004235_080 Hb_004209_020--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_004209_020--Hb_000923_080 Hb_004785_100 Hb_004785_100 Hb_004209_020--Hb_004785_100 Hb_002375_010 Hb_002375_010 Hb_004209_020--Hb_002375_010 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_019153_020 Hb_019153_020 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2012 14.6283 13.7021 8.63686 24.5246 16.148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.5033 6.86798 6.00581 13.5481 9.64107

CAGE analysis