Hb_023344_010

Information

Type -
Description -
Location Contig23344: 49009-61008
Sequence    

Annotation

kegg
ID rcu:RCOM_0542310
description Pre-mRNA-processing protein prp39, putative
nr
ID XP_012085231.1
description PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
swissprot
ID Q4KLU2
description Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
trembl
ID A0A067JUH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17626 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-mrna-processing factor 39 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24510: 49167-60991 , PASA_asmbl_24511: 53503-60991 , PASA_asmbl_24512: 57461-57617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_010 0.0 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
2 Hb_000406_230 0.0492806473 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
3 Hb_000640_310 0.0608700296 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
4 Hb_007558_070 0.0640617256 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
5 Hb_000010_360 0.065163122 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
6 Hb_000191_130 0.0702096933 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_001799_050 0.0748427689 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
8 Hb_004429_160 0.0748569936 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
9 Hb_005260_010 0.0768404029 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
10 Hb_000917_160 0.0771275484 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
11 Hb_000318_120 0.0800776164 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
12 Hb_000398_020 0.0820907265 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
13 Hb_027760_080 0.0831160643 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000264_030 0.0838618022 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
15 Hb_000960_050 0.0838764657 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_001307_080 0.0852947622 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
17 Hb_000236_470 0.08667141 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
18 Hb_000594_040 0.0867970477 - - hypothetical protein L484_013922 [Morus notabilis]
19 Hb_000648_080 0.087921156 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_000230_090 0.0883808799 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_010 Hb_023344_010 Hb_000406_230 Hb_000406_230 Hb_023344_010--Hb_000406_230 Hb_000640_310 Hb_000640_310 Hb_023344_010--Hb_000640_310 Hb_007558_070 Hb_007558_070 Hb_023344_010--Hb_007558_070 Hb_000010_360 Hb_000010_360 Hb_023344_010--Hb_000010_360 Hb_000191_130 Hb_000191_130 Hb_023344_010--Hb_000191_130 Hb_001799_050 Hb_001799_050 Hb_023344_010--Hb_001799_050 Hb_000406_230--Hb_007558_070 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_007558_070--Hb_000191_130 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_007558_070--Hb_000917_160 Hb_007558_070--Hb_000010_360 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_001799_050--Hb_000556_170 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3164 42.1958 28.957 15.0461 40.8764 37.4217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1965 13.824 10.6781 31.7885 23.3815

CAGE analysis