Hb_000556_170

Information

Type -
Description -
Location Contig556: 163916-179721
Sequence    

Annotation

kegg
ID rcu:RCOM_1612470
description hypothetical protein
nr
ID XP_012083552.1
description PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RDE8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612470 PE=4 SV=1
Gene Ontology
ID GO:0003700
description smad fha domain-containing isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48526: 172676-172851 , PASA_asmbl_48527: 174925-176388 , PASA_asmbl_48528: 174585-175262 , PASA_asmbl_48530: 178010-179611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_170 0.0 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
2 Hb_000640_310 0.0525301074 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
3 Hb_000236_470 0.0622554948 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
4 Hb_003633_070 0.0625572807 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
5 Hb_001799_050 0.0631977002 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
6 Hb_140049_040 0.0646379193 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
7 Hb_004480_040 0.0663427419 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
8 Hb_005542_050 0.0670626144 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
9 Hb_005260_010 0.0710959465 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
10 Hb_008147_040 0.0738275982 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
11 Hb_000236_220 0.0738920332 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_002325_040 0.0747711522 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
13 Hb_000768_180 0.075216287 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
14 Hb_000169_130 0.0760974487 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_120803_010 0.0766464257 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
16 Hb_001277_020 0.0770411448 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
17 Hb_004410_070 0.0779980352 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
18 Hb_000191_130 0.0795386017 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
19 Hb_012114_050 0.0795945034 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
20 Hb_001047_200 0.0795960019 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000556_170 Hb_000556_170 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_000640_310--Hb_001799_050 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_003633_070--Hb_000640_310 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_001799_050--Hb_000160_350 Hb_001799_050--Hb_001143_250 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_140049_040--Hb_001277_020 Hb_000169_130 Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000441_070 Hb_000441_070 Hb_004480_040--Hb_000441_070 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0736 20.6882 10.4865 6.0708 13.5879 11.1039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33655 7.03864 6.67016 11.422 7.44108

CAGE analysis