Hb_000418_140

Information

Type -
Description -
Location Contig418: 145683-163315
Sequence    

Annotation

kegg
ID cit:102623596
description DNA damage-binding protein 1a-like
nr
ID XP_012075665.1
description PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
swissprot
ID Q6QNU4
description DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1
trembl
ID A0A067KRP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09253 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna damage-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41332: 145850-163331 , PASA_asmbl_41334: 152786-152957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_140 0.0 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
2 Hb_003633_070 0.0538189214 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
3 Hb_001143_250 0.059060606 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
4 Hb_000162_280 0.0656218458 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
5 Hb_009112_010 0.0661180366 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
6 Hb_000796_190 0.0686070446 - - hypothetical protein F383_31148 [Gossypium arboreum]
7 Hb_007558_120 0.0687151243 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_001147_110 0.0699795653 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
9 Hb_005260_010 0.0705136609 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
10 Hb_002615_090 0.0716302695 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_002174_020 0.0717306734 - - ring finger protein, putative [Ricinus communis]
12 Hb_001799_050 0.0724051533 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_001454_320 0.0727409326 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
14 Hb_000594_040 0.0735446858 - - hypothetical protein L484_013922 [Morus notabilis]
15 Hb_001767_140 0.0738576671 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_006252_020 0.0745695271 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_000780_170 0.0748470551 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_008253_030 0.0750535199 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
19 Hb_000032_010 0.0753425721 - - crooked neck protein, putative [Ricinus communis]
20 Hb_006831_110 0.0754030645 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]

Gene co-expression network

sample Hb_000418_140 Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_000418_140--Hb_003633_070 Hb_001143_250 Hb_001143_250 Hb_000418_140--Hb_001143_250 Hb_000162_280 Hb_000162_280 Hb_000418_140--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_003633_070--Hb_009112_010 Hb_003633_070--Hb_000162_280 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_000162_280--Hb_009112_010 Hb_006615_120 Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_009112_010--Hb_006615_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6521 69.4856 36.4516 31.1698 53.5399 59.6174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7274 19.3283 30.1272 39.7109 29.392

CAGE analysis