Hb_000680_090

Information

Type -
Description -
Location Contig680: 72902-83446
Sequence    

Annotation

kegg
ID rcu:RCOM_0312010
description Protein SEY1, putative
nr
ID XP_002527405.1
description Protein SEY1, putative [Ricinus communis]
swissprot
ID P93042
description Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1
trembl
ID B9SN36
description Protein ROOT HAIR DEFECTIVE 3 homolog OS=Ricinus communis GN=RCOM_0312010 PE=3 SV=1
Gene Ontology
ID GO:0005789
description protein root hair defective 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53748: 72938-83345 , PASA_asmbl_53749: 74911-75072
cDNA
(Sanger)
(ID:Location)		 025_D04.ab1: 79884-83345

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_090 0.0 - - Protein SEY1, putative [Ricinus communis]
2 Hb_000390_320 0.0539788917 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
3 Hb_000878_180 0.058269738 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
4 Hb_000084_250 0.05926905 - - nucleolar phosphoprotein, putative [Ricinus communis]
5 Hb_000162_280 0.0626007694 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
6 Hb_002615_090 0.0638429802 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
7 Hb_003640_040 0.0643692873 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
8 Hb_001195_320 0.0643935408 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
9 Hb_002078_110 0.0644108407 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
10 Hb_004195_200 0.0652790641 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
11 Hb_007576_110 0.065972872 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
12 Hb_006831_110 0.0682297385 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
13 Hb_000070_080 0.0686807587 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_000617_100 0.0690825158 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
15 Hb_014361_070 0.0701866591 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_027380_140 0.0721719663 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
17 Hb_000071_030 0.0725725816 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
18 Hb_008112_030 0.073277787 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002375_010 0.0734859442 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
20 Hb_002025_060 0.0742193298 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000680_090 Hb_000680_090 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000878_180 Hb_000878_180 Hb_000680_090--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_000680_090--Hb_000084_250 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_002375_010 Hb_002375_010 Hb_000390_320--Hb_002375_010 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_143629_110 Hb_143629_110 Hb_000390_320--Hb_143629_110 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_123903_010 Hb_123903_010 Hb_000390_320--Hb_123903_010 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_000878_180--Hb_002615_090 Hb_002235_300 Hb_002235_300 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000878_180--Hb_000084_250 Hb_008695_110 Hb_008695_110 Hb_000084_250--Hb_008695_110 Hb_000084_250--Hb_002025_060 Hb_000574_440 Hb_000574_440 Hb_000084_250--Hb_000574_440 Hb_006831_110 Hb_006831_110 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050 Hb_009112_010 Hb_009112_010 Hb_000162_280--Hb_009112_010 Hb_006615_120 Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_003633_070 Hb_003633_070 Hb_000162_280--Hb_003633_070 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_020831_030 Hb_020831_030 Hb_003640_040--Hb_020831_030 Hb_002056_090 Hb_002056_090 Hb_003640_040--Hb_002056_090 Hb_001195_530 Hb_001195_530 Hb_003640_040--Hb_001195_530 Hb_004195_200 Hb_004195_200 Hb_003640_040--Hb_004195_200 Hb_003640_040--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.5068 55.5504 39.7391 42.8825 62.1405 68.4309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9495 27.8296 48.0727 42.5616 29.2862

CAGE analysis