Hb_008695_110

Information

Type transcription factor
Description TF Family: PHD
Location Contig8695: 89060-102782
Sequence    

Annotation

kegg
ID rcu:RCOM_1032890
description phd finger protein, putative
nr
ID XP_012078148.1
description PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
swissprot
ID Q6IE82
description Protein Jade-3 OS=Mus musculus GN=Jade3 PE=1 SV=1
trembl
ID A0A067KLT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12031 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61099: 97278-97525 , PASA_asmbl_61100: 97954-98681 , PASA_asmbl_61101: 100535-101067 , PASA_asmbl_61102: 98703-102372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_110 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
2 Hb_000084_250 0.0504950163 - - nucleolar phosphoprotein, putative [Ricinus communis]
3 Hb_000914_120 0.0520012017 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
4 Hb_138596_010 0.0581061787 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
5 Hb_000230_090 0.061378966 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
6 Hb_022256_060 0.0617931972 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
7 Hb_000574_440 0.0691627328 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
8 Hb_002025_060 0.070970521 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
9 Hb_001767_140 0.0710134134 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
10 Hb_001635_040 0.0717392452 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
11 Hb_000856_420 0.072499305 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001143_250 0.0729695058 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
13 Hb_003785_040 0.0729904369 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
14 Hb_000103_100 0.0739493037 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
15 Hb_000679_340 0.0739956413 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
16 Hb_003633_070 0.0742338182 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
17 Hb_002078_110 0.0747099052 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_000343_250 0.074716927 - - PREDICTED: protein CASC3 [Jatropha curcas]
19 Hb_000671_070 0.0754406866 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
20 Hb_002235_300 0.0754855098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008695_110 Hb_008695_110 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_002025_060 Hb_002025_060 Hb_000084_250--Hb_002025_060 Hb_000680_090 Hb_000680_090 Hb_000084_250--Hb_000680_090 Hb_000084_250--Hb_000574_440 Hb_006831_110 Hb_006831_110 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050 Hb_000914_120--Hb_000230_090 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_022256_060--Hb_000679_340 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6766 12.8866 11.2886 5.7492 12.562 13.6772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72232 6.73454 8.60362 7.2364 9.39556

CAGE analysis