Hb_000264_030

Information

Type -
Description -
Location Contig264: 11212-16511
Sequence    

Annotation

kegg
ID cit:102613606
description splicing factor 3B subunit 2-like
nr
ID XP_012091562.1
description PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
swissprot
ID Q13435
description Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2
trembl
ID A0A067JLP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21406 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3b subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27582: 11377-16482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_030 0.0 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
2 Hb_000170_150 0.0546828644 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
3 Hb_003371_110 0.0597671003 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
4 Hb_000914_120 0.0618589032 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
5 Hb_001799_050 0.0628692123 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
6 Hb_000289_040 0.0638743987 - - Poly(A) polymerase alpha, putative [Ricinus communis]
7 Hb_140049_040 0.0640668462 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
8 Hb_002864_010 0.0654852722 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
9 Hb_001767_140 0.0663721814 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
10 Hb_000230_090 0.0667013721 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
11 Hb_183612_040 0.0697692151 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
12 Hb_000896_080 0.0708129926 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
13 Hb_027760_080 0.0713831868 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000640_310 0.072551454 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
15 Hb_000648_080 0.0730363328 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
16 Hb_002174_020 0.0732694323 - - ring finger protein, putative [Ricinus communis]
17 Hb_000092_020 0.0738980353 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
18 Hb_002007_020 0.0746953798 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
19 Hb_003633_070 0.0751989546 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
20 Hb_000960_050 0.0754235835 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]

Gene co-expression network

sample Hb_000264_030 Hb_000264_030 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_001799_050 Hb_001799_050 Hb_000264_030--Hb_001799_050 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_000170_150--Hb_003371_110 Hb_003470_080 Hb_003470_080 Hb_000170_150--Hb_003470_080 Hb_000170_150--Hb_000289_040 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_000230_090 Hb_000230_090 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000914_120--Hb_001767_140 Hb_000640_310 Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_002876_130 Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_000289_040--Hb_140049_040 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_140049_040--Hb_001767_140 Hb_140049_040--Hb_002876_130 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.584 52.7143 28.8552 24.6611 40.8361 52.3992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6752 27.9352 17.7472 33.2781 30.0522

CAGE analysis