Hb_003470_080

Information

Type transcription factor
Description TF Family: SNF2
Location Contig3470: 67228-83529
Sequence    

Annotation

kegg
ID rcu:RCOM_0342920
description Helicase, putative (EC:2.7.11.1)
nr
ID XP_012080820.1
description PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
swissprot
ID Q7X9V2
description Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1
trembl
ID B9SBN6
description Helicase, putative OS=Ricinus communis GN=RCOM_0342920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein photoperiod-independent early flowering 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36272: 68668-74379 , PASA_asmbl_36273: 71066-71404 , PASA_asmbl_36275: 75195-79332 , PASA_asmbl_36276: 77685-79335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_080 0.0 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
2 Hb_000003_190 0.0535135706 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
3 Hb_003206_130 0.0557626131 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
4 Hb_002253_080 0.0603857923 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
5 Hb_001080_230 0.0619894917 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_000069_470 0.0628246483 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
7 Hb_000170_150 0.0632784213 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
8 Hb_012194_030 0.0638200517 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
9 Hb_001104_190 0.0655160774 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
10 Hb_027346_010 0.0668698363 - - -
11 Hb_000395_130 0.0676128693 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
12 Hb_009150_020 0.0685819143 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
13 Hb_002085_030 0.0687871915 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
14 Hb_140049_040 0.069426551 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
15 Hb_012305_030 0.0697969772 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
16 Hb_006117_080 0.0705317231 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
17 Hb_000092_020 0.0715114131 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
18 Hb_000329_370 0.073067577 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
19 Hb_001767_140 0.0757394362 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
20 Hb_162275_050 0.0759896464 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_003470_080 Hb_003470_080 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_001080_230 Hb_001080_230 Hb_003470_080--Hb_001080_230 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_000003_190--Hb_001080_230 Hb_000092_020 Hb_000092_020 Hb_000003_190--Hb_000092_020 Hb_002872_040 Hb_002872_040 Hb_000003_190--Hb_002872_040 Hb_000395_130 Hb_000395_130 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_001550_060 Hb_001550_060 Hb_003206_130--Hb_001550_060 Hb_000441_120 Hb_000441_120 Hb_003206_130--Hb_000441_120 Hb_159558_010 Hb_159558_010 Hb_003206_130--Hb_159558_010 Hb_006420_040 Hb_006420_040 Hb_003206_130--Hb_006420_040 Hb_000614_210 Hb_000614_210 Hb_003206_130--Hb_000614_210 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002267_140 Hb_002267_140 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_001080_230--Hb_000092_020 Hb_001080_230--Hb_000395_130 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_000264_030 Hb_000264_030 Hb_000170_150--Hb_000264_030 Hb_000170_150--Hb_159558_010 Hb_000170_150--Hb_001767_140 Hb_003371_110 Hb_003371_110 Hb_000170_150--Hb_003371_110 Hb_000289_040 Hb_000289_040 Hb_000170_150--Hb_000289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34055 13.5495 5.3055 5.67153 9.14233 8.45859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29269 7.06445 5.84752 6.78748 9.04954

CAGE analysis