Hb_006117_080

Information

Type -
Description -
Location Contig6117: 55158-61948
Sequence    

Annotation

kegg
ID rcu:RCOM_0553900
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012079041.1
description PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
swissprot
ID Q9LNC4
description Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1
trembl
ID A0A067K9Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12239 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transcription factor gte4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51007: 55331-61922 , PASA_asmbl_51009: 60583-61922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006117_080 0.0 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
2 Hb_001104_190 0.0546116039 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
3 Hb_000069_470 0.0548372589 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_009150_020 0.0554653313 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
5 Hb_000321_150 0.0561396629 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_024185_010 0.0646951367 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
7 Hb_000260_640 0.0683860353 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
8 Hb_003470_080 0.0705317231 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
9 Hb_000661_130 0.0712323471 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
10 Hb_002253_080 0.0715049137 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
11 Hb_007575_080 0.0719360091 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_011242_060 0.07530144 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
13 Hb_002783_040 0.0756878653 transcription factor TF Family: IWS1 -
14 Hb_001054_030 0.0777637765 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
15 Hb_005188_040 0.0788163326 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
16 Hb_003729_030 0.079845544 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
17 Hb_008053_040 0.0824112335 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
18 Hb_002542_130 0.082634012 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
19 Hb_000977_120 0.0826781127 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
20 Hb_009767_080 0.0840731624 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_006117_080 Hb_006117_080 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_000321_150 Hb_000321_150 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_001104_190--Hb_000069_470 Hb_003470_080 Hb_003470_080 Hb_001104_190--Hb_003470_080 Hb_001104_190--Hb_000321_150 Hb_001080_230 Hb_001080_230 Hb_001104_190--Hb_001080_230 Hb_000599_190 Hb_000599_190 Hb_001104_190--Hb_000599_190 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_001279_120 Hb_001279_120 Hb_009150_020--Hb_001279_120 Hb_002783_040 Hb_002783_040 Hb_009150_020--Hb_002783_040 Hb_009150_020--Hb_003470_080 Hb_002798_070 Hb_002798_070 Hb_009150_020--Hb_002798_070 Hb_009150_020--Hb_000069_470 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_007575_080 Hb_007575_080 Hb_024185_010--Hb_007575_080 Hb_000720_150 Hb_000720_150 Hb_024185_010--Hb_000720_150 Hb_008053_040 Hb_008053_040 Hb_024185_010--Hb_008053_040 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130 Hb_001054_030 Hb_001054_030 Hb_000260_640--Hb_001054_030 Hb_002253_080 Hb_002253_080 Hb_000260_640--Hb_002253_080 Hb_000260_640--Hb_000321_150 Hb_000661_200 Hb_000661_200 Hb_000260_640--Hb_000661_200 Hb_000260_640--Hb_003729_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2233 50.6461 14.7172 16.3621 23.7977 23.2295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0288 15.7947 18.83 16.2146 28.3364

CAGE analysis