Hb_000703_130

Information

Type -
Description -
Location Contig703: 138211-150756
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04160g
description POPTRDRAFT_824579; hypothetical protein
nr
ID XP_012080184.1
description PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
swissprot
ID Q8VHK9
description ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2
trembl
ID A0A067LES7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02422 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54929: 138292-139684 , PASA_asmbl_54930: 138292-138769 , PASA_asmbl_54931: 139906-140870 , PASA_asmbl_54932: 140961-141688 , PASA_asmbl_54933: 143060-144730 , PASA_asmbl_54934: 144777-146571 , PASA_asmbl_54935: 146758-150669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_130 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
2 Hb_000265_090 0.0434623051 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
3 Hb_000176_100 0.0550186169 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
4 Hb_007818_030 0.0600237235 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
5 Hb_009476_090 0.0604622579 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
6 Hb_000579_010 0.0624887192 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
7 Hb_002687_090 0.0639246455 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_155159_010 0.0648237891 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
9 Hb_000665_230 0.0658769694 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
10 Hb_003581_170 0.0664875115 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_000949_010 0.0671845046 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
12 Hb_013405_160 0.0676753889 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_011689_030 0.0689689692 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
14 Hb_005832_010 0.0694425286 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
15 Hb_002027_280 0.0713239687 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
16 Hb_024185_010 0.0731060446 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
17 Hb_007426_060 0.073183079 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
18 Hb_005214_150 0.0733215061 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
19 Hb_000896_060 0.0733247632 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000377_050 0.0736245288 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_130 Hb_000703_130 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_011242_060 Hb_011242_060 Hb_000265_090--Hb_011242_060 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_010712_040 Hb_010712_040 Hb_000265_090--Hb_010712_040 Hb_000836_020 Hb_000836_020 Hb_000265_090--Hb_000836_020 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000526_060 Hb_000526_060 Hb_007818_030--Hb_000526_060 Hb_007818_030--Hb_000176_100 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_005832_010 Hb_005832_010 Hb_009476_090--Hb_005832_010 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_013405_160 Hb_013405_160 Hb_000579_010--Hb_013405_160 Hb_003939_060 Hb_003939_060 Hb_000579_010--Hb_003939_060 Hb_000958_050 Hb_000958_050 Hb_000579_010--Hb_000958_050 Hb_000083_070 Hb_000083_070 Hb_000579_010--Hb_000083_070 Hb_000099_040 Hb_000099_040 Hb_000579_010--Hb_000099_040 Hb_002687_090--Hb_013405_160 Hb_002687_090--Hb_007818_030 Hb_000086_050 Hb_000086_050 Hb_002687_090--Hb_000086_050 Hb_002687_090--Hb_000579_010 Hb_007283_030 Hb_007283_030 Hb_002687_090--Hb_007283_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.28634 20.8771 8.48014 6.90936 10.5332 10.0368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15494 4.06716 5.3709 9.74929 12.5389

CAGE analysis