Hb_007283_030

Information

Type -
Description -
Location Contig7283: 36085-41401
Sequence    

Annotation

kegg
ID mdm:103414356
description pre-mRNA-processing protein 40C-like
nr
ID XP_008350971.1
description PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
swissprot
ID -
description -
trembl
ID W5A4R9
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55881: 20751-37553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007283_030 0.0 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
2 Hb_007818_040 0.0610188736 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
3 Hb_155159_010 0.0610245616 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
4 Hb_011202_030 0.0654211664 - - arsenite-resistance protein, putative [Ricinus communis]
5 Hb_000086_050 0.0673204827 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
6 Hb_007576_230 0.0678842525 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
7 Hb_000377_050 0.0704824179 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
8 Hb_001221_090 0.0709190325 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
9 Hb_002571_030 0.0748215707 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
10 Hb_011920_020 0.0770297322 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
11 Hb_009449_090 0.0775133216 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
12 Hb_002687_090 0.0786204813 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
13 Hb_001723_140 0.0807174156 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
14 Hb_000645_130 0.080795262 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
15 Hb_001959_270 0.0816922346 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001231_090 0.0828301785 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
17 Hb_009476_090 0.0834465839 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
18 Hb_001534_210 0.0839427449 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
19 Hb_004032_230 0.0857500082 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
20 Hb_004236_010 0.0866367386 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_007283_030 Hb_007283_030 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050 Hb_002571_030 Hb_002571_030 Hb_007818_040--Hb_002571_030 Hb_007818_040--Hb_007576_230 Hb_001959_270 Hb_001959_270 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_007818_040--Hb_000377_050 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_001221_090 Hb_001221_090 Hb_011202_030--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_011202_030--Hb_001904_030 Hb_044486_040 Hb_044486_040 Hb_011202_030--Hb_044486_040 Hb_011202_030--Hb_155159_010 Hb_009476_090 Hb_009476_090 Hb_011202_030--Hb_009476_090 Hb_009449_090 Hb_009449_090 Hb_000086_050--Hb_009449_090 Hb_007576_220 Hb_007576_220 Hb_000086_050--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_000086_050--Hb_007576_230 Hb_000086_050--Hb_155159_010 Hb_007576_230--Hb_007576_220 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_000377_050--Hb_009476_090 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_000377_050--Hb_001959_270 Hb_000377_050--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.81398 9.65085 7.46595 3.45974 5.52617 5.35401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64369 1.53748 2.1364 5.39706 6.69566

CAGE analysis