Hb_044486_040

Information

Type -
Description -
Location Contig44486: 31629-45612
Sequence    

Annotation

kegg
ID mdm:103418116
description ion channel CASTOR-like
nr
ID XP_008354486.1
description PREDICTED: ion channel CASTOR-like [Malus domestica]
swissprot
ID Q75LD5
description Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1
trembl
ID A0A061EIF6
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_019847 PE=4 SV=1
Gene Ontology
ID GO:0009536
description ion channel castor-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42798: 15380-45555 , PASA_asmbl_42800: 15800-33308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044486_040 0.0 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
2 Hb_001646_010 0.0501916782 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
3 Hb_000243_130 0.0636483752 - - hypothetical protein M569_10795, partial [Genlisea aurea]
4 Hb_001221_090 0.0734902469 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
5 Hb_001904_030 0.073714591 - - PREDICTED: importin-5 [Jatropha curcas]
6 Hb_011202_030 0.0745328211 - - arsenite-resistance protein, putative [Ricinus communis]
7 Hb_001341_160 0.0746843505 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
8 Hb_002374_210 0.078542802 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
9 Hb_000010_420 0.0812761398 - - Callose synthase 10 [Morus notabilis]
10 Hb_004223_160 0.0817575321 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_000172_340 0.0836425565 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
12 Hb_002005_030 0.0852096976 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
13 Hb_000260_780 0.0861142933 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
14 Hb_003216_090 0.086716522 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
15 Hb_000608_230 0.0869176427 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
16 Hb_002092_070 0.087792154 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
17 Hb_007818_030 0.0880918471 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
18 Hb_006907_140 0.089402041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005832_010 0.0894393899 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
20 Hb_003142_040 0.0914202022 - - Sf3a3 [Gossypium arboreum]

Gene co-expression network

sample Hb_044486_040 Hb_044486_040 Hb_001646_010 Hb_001646_010 Hb_044486_040--Hb_001646_010 Hb_000243_130 Hb_000243_130 Hb_044486_040--Hb_000243_130 Hb_001221_090 Hb_001221_090 Hb_044486_040--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_044486_040--Hb_001904_030 Hb_011202_030 Hb_011202_030 Hb_044486_040--Hb_011202_030 Hb_001341_160 Hb_001341_160 Hb_044486_040--Hb_001341_160 Hb_001646_010--Hb_001341_160 Hb_002374_210 Hb_002374_210 Hb_001646_010--Hb_002374_210 Hb_001646_010--Hb_011202_030 Hb_000010_420 Hb_000010_420 Hb_001646_010--Hb_000010_420 Hb_002005_030 Hb_002005_030 Hb_001646_010--Hb_002005_030 Hb_007894_160 Hb_007894_160 Hb_000243_130--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_000243_130--Hb_004064_050 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_002475_040 Hb_002475_040 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_001221_090--Hb_011202_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_007283_030 Hb_007283_030 Hb_011202_030--Hb_007283_030 Hb_011202_030--Hb_001904_030 Hb_155159_010 Hb_155159_010 Hb_011202_030--Hb_155159_010 Hb_009476_090 Hb_009476_090 Hb_011202_030--Hb_009476_090 Hb_001341_160--Hb_003604_050 Hb_001341_160--Hb_000172_340 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54889 14.9925 8.83812 8.03241 9.34246 6.71909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23408 2.23573 3.4338 12.4077 8.8097

CAGE analysis