Hb_005832_010

Information

Type -
Description -
Location Contig5832: 15437-35005
Sequence    

Annotation

kegg
ID rcu:RCOM_0267750
description hypothetical protein
nr
ID XP_012078509.1
description PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9LTT8
description Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS PE=1 SV=1
trembl
ID A0A067K941
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13187 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49880: 15536-35090 , PASA_asmbl_49881: 17781-18240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005832_010 0.0 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
2 Hb_001904_030 0.0440085047 - - PREDICTED: importin-5 [Jatropha curcas]
3 Hb_004223_160 0.0470055167 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
4 Hb_009476_090 0.0473056435 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
5 Hb_002007_110 0.0531701508 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
6 Hb_001951_170 0.0545175932 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_000172_340 0.0565852473 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
8 Hb_000934_210 0.0616218268 - - suppressor of ty, putative [Ricinus communis]
9 Hb_003604_050 0.0634570001 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
10 Hb_000479_240 0.0635702892 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
11 Hb_003124_160 0.064368675 - - dynamin, putative [Ricinus communis]
12 Hb_003581_170 0.0660471979 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
13 Hb_027472_220 0.0668326505 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
14 Hb_002027_280 0.0683057367 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
15 Hb_123531_010 0.0684666255 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
16 Hb_000703_130 0.0694425286 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
17 Hb_003939_060 0.070363939 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003216_090 0.0712774511 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
19 Hb_009486_170 0.0721482391 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
20 Hb_000377_050 0.0723771939 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005832_010 Hb_005832_010 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_004223_160--Hb_001951_170 Hb_004223_160--Hb_009476_090 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_000703_130 Hb_000703_130 Hb_009476_090--Hb_000703_130 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000172_340--Hb_000066_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83222 15.9521 7.86535 7.9283 8.14359 9.32623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27093 3.79134 3.61899 11.0392 11.3802

CAGE analysis