Hb_002007_110

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig2007: 72294-79161
Sequence    

Annotation

kegg
ID rcu:RCOM_1432610
description transcription factor, putative
nr
ID XP_012089033.1
description PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JU18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23328 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transcription factor jumonji domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20367: 72236-73535 , PASA_asmbl_20368: 73548-75699 , PASA_asmbl_20369: 75941-79157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_110 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
2 Hb_012055_110 0.0478311855 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
3 Hb_123531_010 0.0525254839 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
4 Hb_005832_010 0.0531701508 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
5 Hb_000331_580 0.0547387313 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
6 Hb_000066_150 0.0551600263 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_006031_010 0.0555493516 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
8 Hb_000934_210 0.0556618555 - - suppressor of ty, putative [Ricinus communis]
9 Hb_000008_240 0.0577756224 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001951_170 0.0595736604 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_000958_050 0.0604109542 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
12 Hb_000665_230 0.0607870568 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_012244_020 0.0613828614 - - calpain, putative [Ricinus communis]
14 Hb_001904_030 0.0619418979 - - PREDICTED: importin-5 [Jatropha curcas]
15 Hb_003939_060 0.0634829104 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000003_100 0.0644082453 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
17 Hb_003929_210 0.065162978 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
18 Hb_000172_340 0.066943092 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
19 Hb_002357_070 0.0686589945 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
20 Hb_043362_010 0.0687755259 - - hypothetical protein JCGZ_23765 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_110 Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_000934_210 Hb_000934_210 Hb_123531_010--Hb_000934_210 Hb_123531_010--Hb_000331_580 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_005832_010--Hb_000172_340 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_009486_090 Hb_009486_090 Hb_006031_010--Hb_009486_090 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_001377_100 Hb_001377_100 Hb_006031_010--Hb_001377_100 Hb_006031_010--Hb_001951_170 Hb_006031_010--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6798 25.7547 14.6673 16.1555 13.3406 16.1282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.36359 6.47479 9.15812 18.0253 23.5855

CAGE analysis