Hb_004032_200

Information

Type transcription factor
Description TF Family: SET
Location Contig4032: 199153-210098
Sequence    

Annotation

kegg
ID rcu:RCOM_1602600
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012073523.1
description PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
swissprot
ID F4K1J4
description Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana GN=ATXR7 PE=2 SV=1
trembl
ID A0A067KWV1
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_08001 PE=4 SV=1
Gene Ontology
ID GO:0005515
description set domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40005: 199817-200329 , PASA_asmbl_40006: 199159-200209 , PASA_asmbl_40007: 200335-203454 , PASA_asmbl_40008: 200335-203500 , PASA_asmbl_40009: 203517-209208 , PASA_asmbl_40010: 207139-209208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_200 0.0 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
2 Hb_000066_150 0.0671658367 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_012055_040 0.0721761112 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_000059_230 0.0778452623 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
5 Hb_003805_040 0.0830658387 - - Sacsin [Glycine soja]
6 Hb_001478_040 0.0831715847 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
7 Hb_006839_010 0.0859679938 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
8 Hb_123531_010 0.0864236562 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
9 Hb_005215_010 0.0872482123 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
10 Hb_007245_020 0.0875004742 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
11 Hb_000358_100 0.0875834251 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
12 Hb_001648_020 0.0876140257 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
13 Hb_133702_020 0.0901944787 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_011249_070 0.0918636837 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
15 Hb_012055_110 0.0921950748 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
16 Hb_005701_050 0.0933429234 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
17 Hb_011174_020 0.0935392261 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
18 Hb_001377_100 0.0939766443 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
19 Hb_003040_050 0.0942409829 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
20 Hb_001904_030 0.0944868948 - - PREDICTED: importin-5 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_200 Hb_004032_200 Hb_000066_150 Hb_000066_150 Hb_004032_200--Hb_000066_150 Hb_012055_040 Hb_012055_040 Hb_004032_200--Hb_012055_040 Hb_000059_230 Hb_000059_230 Hb_004032_200--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_004032_200--Hb_003805_040 Hb_001478_040 Hb_001478_040 Hb_004032_200--Hb_001478_040 Hb_006839_010 Hb_006839_010 Hb_004032_200--Hb_006839_010 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012518_070 Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050 Hb_009486_170 Hb_009486_170 Hb_003805_040--Hb_009486_170 Hb_000665_230 Hb_000665_230 Hb_003805_040--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_002521_020 Hb_002521_020 Hb_003805_040--Hb_002521_020 Hb_000069_610 Hb_000069_610 Hb_001478_040--Hb_000069_610 Hb_005701_050 Hb_005701_050 Hb_001478_040--Hb_005701_050 Hb_001478_040--Hb_000059_230 Hb_007597_010 Hb_007597_010 Hb_001478_040--Hb_007597_010 Hb_170077_010 Hb_170077_010 Hb_001478_040--Hb_170077_010 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_006839_010--Hb_003040_050 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69571 5.21657 2.82013 4.58611 2.81232 3.47318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.890391 2.11902 2.05944 3.51082 5.41001

CAGE analysis