Hb_001478_040

Information

Type -
Description -
Location Contig1478: 17512-19608
Sequence    

Annotation

kegg
ID vvi:100258733
description pentatricopeptide repeat-containing protein At1g08070
nr
ID XP_012079978.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
swissprot
ID Q9LN01
description Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
trembl
ID A0A067K7K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12082: 17891-18318 , PASA_asmbl_12083: 18554-19305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
2 Hb_004032_200 0.0831715847 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
3 Hb_000069_610 0.0900909652 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
4 Hb_005701_050 0.0937530333 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
5 Hb_000059_230 0.0939514409 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
6 Hb_007597_010 0.0970255428 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
7 Hb_170077_010 0.098228769 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_000179_190 0.098865147 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
9 Hb_004044_050 0.0999194126 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
10 Hb_001329_250 0.0999871287 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
11 Hb_000270_190 0.1013143331 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
12 Hb_000684_350 0.1023265736 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
13 Hb_023344_140 0.1031194286 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
14 Hb_000358_100 0.1055918343 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
15 Hb_048476_080 0.1062401722 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
16 Hb_011310_100 0.1066193743 - - hypothetical protein CICLE_v10008199mg [Citrus clementina]
17 Hb_000358_220 0.1069031974 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_000066_150 0.1078695541 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_000110_350 0.1086393542 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
20 Hb_000359_190 0.1086530706 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001478_040 Hb_001478_040 Hb_004032_200 Hb_004032_200 Hb_001478_040--Hb_004032_200 Hb_000069_610 Hb_000069_610 Hb_001478_040--Hb_000069_610 Hb_005701_050 Hb_005701_050 Hb_001478_040--Hb_005701_050 Hb_000059_230 Hb_000059_230 Hb_001478_040--Hb_000059_230 Hb_007597_010 Hb_007597_010 Hb_001478_040--Hb_007597_010 Hb_170077_010 Hb_170077_010 Hb_001478_040--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_004032_200--Hb_000066_150 Hb_012055_040 Hb_012055_040 Hb_004032_200--Hb_012055_040 Hb_004032_200--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_004032_200--Hb_003805_040 Hb_006839_010 Hb_006839_010 Hb_004032_200--Hb_006839_010 Hb_000788_030 Hb_000788_030 Hb_000069_610--Hb_000788_030 Hb_006846_170 Hb_006846_170 Hb_000069_610--Hb_006846_170 Hb_004705_160 Hb_004705_160 Hb_000069_610--Hb_004705_160 Hb_088584_010 Hb_088584_010 Hb_000069_610--Hb_088584_010 Hb_000748_090 Hb_000748_090 Hb_000069_610--Hb_000748_090 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_000958_050 Hb_000958_050 Hb_005701_050--Hb_000958_050 Hb_012055_110 Hb_012055_110 Hb_005701_050--Hb_012055_110 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_000934_210 Hb_000934_210 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050 Hb_003929_070 Hb_003929_070 Hb_007597_010--Hb_003929_070 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653694 2.0036 1.4708 1.67453 1.26018 0.943941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27841 0.808854 0.831864 0.871154 2.17531

CAGE analysis