Hb_001677_200

Information

Type -
Description -
Location Contig1677: 202814-205139
Sequence    

Annotation

kegg
ID rcu:RCOM_1482390
description hypothetical protein
nr
ID XP_002524234.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W115
description PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1
trembl
ID B9SE15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1482390 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pra1 family protein a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15570: 202814-205157 , PASA_asmbl_15571: 204669-204823
cDNA
(Sanger)
(ID:Location)		 006_D19.ab1: 203030-205157 , 009_H13.ab1: 203005-205157

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_023313_040 0.0716656954 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
3 Hb_001405_210 0.0719979576 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
4 Hb_007597_010 0.0730764901 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
5 Hb_044486_020 0.0746937248 - - CASTOR protein [Glycine max]
6 Hb_000160_070 0.0754129191 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
7 Hb_000702_090 0.0811833546 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
8 Hb_001002_060 0.0815307967 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
9 Hb_001856_180 0.0838861231 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
10 Hb_001250_050 0.0840520319 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
11 Hb_005064_010 0.085071923 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
12 Hb_005977_100 0.0858394552 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
13 Hb_001227_120 0.0864248815 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
14 Hb_004064_040 0.0870545899 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
15 Hb_006120_050 0.0872169102 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
16 Hb_004102_170 0.0879181478 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
17 Hb_000954_010 0.088368894 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
18 Hb_000054_040 0.0888235487 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
19 Hb_002740_080 0.0896224015 - - flap endonuclease-1, putative [Ricinus communis]
20 Hb_002045_170 0.0912995385 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001677_200 Hb_001677_200 Hb_023313_040 Hb_023313_040 Hb_001677_200--Hb_023313_040 Hb_001405_210 Hb_001405_210 Hb_001677_200--Hb_001405_210 Hb_007597_010 Hb_007597_010 Hb_001677_200--Hb_007597_010 Hb_044486_020 Hb_044486_020 Hb_001677_200--Hb_044486_020 Hb_000160_070 Hb_000160_070 Hb_001677_200--Hb_000160_070 Hb_000702_090 Hb_000702_090 Hb_001677_200--Hb_000702_090 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_003929_070 Hb_003929_070 Hb_007597_010--Hb_003929_070 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_007597_010--Hb_007248_030 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_044486_020--Hb_086063_020 Hb_002740_080 Hb_002740_080 Hb_000160_070--Hb_002740_080 Hb_001227_120 Hb_001227_120 Hb_000160_070--Hb_001227_120 Hb_004064_040 Hb_004064_040 Hb_000160_070--Hb_004064_040 Hb_005064_010 Hb_005064_010 Hb_000160_070--Hb_005064_010 Hb_000903_010 Hb_000903_010 Hb_000160_070--Hb_000903_010 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_000702_090--Hb_007248_030 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9485 23.867 35.6561 47.7163 23.1776 21.5365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2867 16.9312 12.6695 21.2219 25.7131

CAGE analysis