Hb_000020_160

Information

Type -
Description -
Location Contig20: 289309-290400
Sequence    

Annotation

kegg
ID tcc:TCM_021900
description Zinc finger family protein, putative
nr
ID XP_012459945.1
description PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A0D2S0W2
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G105100 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20159: 289232-290849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_160 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
2 Hb_000358_100 0.0469879179 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
3 Hb_000358_220 0.0707550839 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
4 Hb_044486_020 0.0718126301 - - CASTOR protein [Glycine max]
5 Hb_024650_080 0.0718181789 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
6 Hb_000172_340 0.0723064902 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
7 Hb_170077_010 0.0725328883 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_007245_020 0.0734254093 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
9 Hb_000103_290 0.0754165002 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
10 Hb_000359_190 0.0759336136 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
11 Hb_000066_150 0.0764714232 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
12 Hb_002461_020 0.0769212801 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
13 Hb_000284_230 0.0772464679 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_000588_080 0.0772547955 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
15 Hb_004429_010 0.0779787913 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_010315_020 0.0789524229 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
17 Hb_012055_110 0.079381514 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
18 Hb_000046_600 0.0796926902 - - PREDICTED: cullin-1-like [Jatropha curcas]
19 Hb_001558_040 0.0797725955 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
20 Hb_001059_130 0.0800209121 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_160 Hb_000020_160 Hb_000358_100 Hb_000358_100 Hb_000020_160--Hb_000358_100 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_044486_020 Hb_044486_020 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000172_340 Hb_000172_340 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_000284_230 Hb_000284_230 Hb_000358_100--Hb_000284_230 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000358_100--Hb_000172_340 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000358_220--Hb_170077_010 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_044486_020--Hb_000359_190 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020 Hb_001408_110 Hb_001408_110 Hb_024650_080--Hb_001408_110 Hb_016172_030 Hb_016172_030 Hb_024650_080--Hb_016172_030 Hb_022425_030 Hb_022425_030 Hb_024650_080--Hb_022425_030 Hb_000103_290 Hb_000103_290 Hb_024650_080--Hb_000103_290 Hb_000926_150 Hb_000926_150 Hb_024650_080--Hb_000926_150 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_000172_340--Hb_007245_020 Hb_000172_340--Hb_000066_150 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84298 10.7947 8.26381 11.2952 6.67165 5.2803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59185 2.43182 2.91214 8.20981 9.42037

CAGE analysis