Hb_000684_350

Information

Type -
Description -
Location Contig684: 349415-356904
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13450g
description hypothetical protein
nr
ID XP_012082266.1
description PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
swissprot
ID O95628
description CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3
trembl
ID A0A067JYM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16455 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54014: 349489-353320 , PASA_asmbl_54016: 354945-356978 , PASA_asmbl_54017: 356105-356984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_350 0.0 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
2 Hb_000358_220 0.062665374 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
3 Hb_000059_230 0.0637773498 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
4 Hb_012055_110 0.0663135278 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
5 Hb_000066_150 0.0761611864 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_006839_010 0.0825767372 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
7 Hb_000958_050 0.0834873224 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
8 Hb_005211_020 0.0838125207 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
9 Hb_002007_110 0.0844308897 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
10 Hb_000320_470 0.0853027394 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_008642_060 0.0856314497 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
12 Hb_002461_020 0.0865074302 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
13 Hb_000538_280 0.0870113425 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
14 Hb_006355_020 0.0886396246 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
15 Hb_004044_050 0.088760362 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
16 Hb_000358_100 0.089262515 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
17 Hb_005701_050 0.090053739 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
18 Hb_011457_140 0.0901198595 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
19 Hb_003040_050 0.0904685133 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
20 Hb_009288_020 0.0907566355 - - PREDICTED: protein FRIGIDA [Jatropha curcas]

Gene co-expression network

sample Hb_000684_350 Hb_000684_350 Hb_000358_220 Hb_000358_220 Hb_000684_350--Hb_000358_220 Hb_000059_230 Hb_000059_230 Hb_000684_350--Hb_000059_230 Hb_012055_110 Hb_012055_110 Hb_000684_350--Hb_012055_110 Hb_000066_150 Hb_000066_150 Hb_000684_350--Hb_000066_150 Hb_006839_010 Hb_006839_010 Hb_000684_350--Hb_006839_010 Hb_000958_050 Hb_000958_050 Hb_000684_350--Hb_000958_050 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000358_220--Hb_000066_150 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_000958_050--Hb_002007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01744 6.28964 5.28957 5.3892 4.49801 3.87793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22977 1.42245 2.58568 3.85262 8.71963

CAGE analysis