Hb_003929_210

Information

Type transcription factor
Description TF Family: SBP
Location Contig3929: 123814-133085
Sequence    

Annotation

kegg
ID rcu:RCOM_1003460
description Squamosa promoter-binding protein, putative
nr
ID XP_002519316.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q75LH6
description Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1
trembl
ID B9RZZ7
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_1003460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39368: 123909-133081 , PASA_asmbl_39369: 128899-129203
cDNA
(Sanger)
(ID:Location)		 037_B21.ab1: 123909-124624

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_210 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_003939_060 0.038948554 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000110_350 0.0482613833 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
4 Hb_033312_130 0.0520787202 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
5 Hb_000996_020 0.0571653888 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_000358_220 0.0572950312 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
7 Hb_002768_050 0.0601327943 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
8 Hb_000373_170 0.0615002699 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
9 Hb_000008_240 0.0616250542 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000445_060 0.0618342631 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_008642_060 0.063271552 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
12 Hb_000179_190 0.0634381053 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
13 Hb_003918_030 0.0647863096 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
14 Hb_002007_110 0.065162978 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
15 Hb_000035_100 0.0672934563 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_170077_010 0.0687262507 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
17 Hb_000958_050 0.0690629783 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
18 Hb_000645_130 0.0737276705 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
19 Hb_000030_140 0.0740993682 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_009302_030 0.0746989153 - - hypothetical protein RCOM_1176340 [Ricinus communis]

Gene co-expression network

sample Hb_003929_210 Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_003939_060--Hb_000110_350 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020 Hb_001008_130 Hb_001008_130 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.96 46.6203 31.3194 27.0093 16.2878 20.9449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6774 12.9581 15.4536 26.0172 37.3488

CAGE analysis