Hb_000960_080

Information

Type -
Description -
Location Contig960: 95636-108010
Sequence    

Annotation

kegg
ID rcu:RCOM_1324430
description hypothetical protein
nr
ID XP_012090934.1
description PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q94AI7
description Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1
trembl
ID B9S1Z2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324430 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein topless-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63712: 95656-95809 , PASA_asmbl_63713: 95854-107984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_080 0.0 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
2 Hb_001507_050 0.0402619327 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003680_020 0.0415168041 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000318_150 0.0470032813 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_000270_170 0.0565735047 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
6 Hb_000059_240 0.0612391525 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
7 Hb_033312_130 0.0626059796 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
8 Hb_048476_080 0.0644085063 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_008165_020 0.0671350878 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
10 Hb_001008_130 0.0684394338 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
11 Hb_006100_020 0.0686966777 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
12 Hb_000173_190 0.0695906513 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000844_050 0.0714525111 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
14 Hb_011674_040 0.0730953003 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
15 Hb_000035_100 0.0745219153 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_007904_300 0.0752595962 - - copine, putative [Ricinus communis]
17 Hb_003124_270 0.0763743673 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
18 Hb_006210_010 0.0765458919 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
19 Hb_160608_010 0.0765847819 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_001141_240 0.0766380071 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000960_080 Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000960_080--Hb_001507_050 Hb_003680_020 Hb_003680_020 Hb_000960_080--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000960_080--Hb_000318_150 Hb_000270_170 Hb_000270_170 Hb_000960_080--Hb_000270_170 Hb_000059_240 Hb_000059_240 Hb_000960_080--Hb_000059_240 Hb_033312_130 Hb_033312_130 Hb_000960_080--Hb_033312_130 Hb_001507_050--Hb_003680_020 Hb_048476_080 Hb_048476_080 Hb_001507_050--Hb_048476_080 Hb_001507_050--Hb_000270_170 Hb_008165_020 Hb_008165_020 Hb_001507_050--Hb_008165_020 Hb_160608_010 Hb_160608_010 Hb_001507_050--Hb_160608_010 Hb_000844_050 Hb_000844_050 Hb_003680_020--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_003680_020--Hb_003661_010 Hb_003680_020--Hb_048476_080 Hb_003680_020--Hb_000059_240 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_006210_010 Hb_006210_010 Hb_000059_240--Hb_006210_010 Hb_000059_240--Hb_033312_130 Hb_007904_300 Hb_007904_300 Hb_000059_240--Hb_007904_300 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_001008_130 Hb_001008_130 Hb_033312_130--Hb_001008_130 Hb_033312_130--Hb_006100_020 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_033312_130--Hb_002357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19335 22.8646 19.1385 19.0565 6.26646 8.3108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56955 8.6298 8.16219 21.0642 23.4899

CAGE analysis