Hb_000173_190

Information

Type -
Description -
Location Contig173: 163941-169432
Sequence    

Annotation

kegg
ID rcu:RCOM_0678080
description hypothetical protein
nr
ID XP_002516784.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67XQ0
description DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=1 SV=1
trembl
ID B9RSR5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description duf21 domain-containing protein at4g14240-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16428: 167095-167356 , PASA_asmbl_16429: 163959-169539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001635_110 0.0568001507 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
3 Hb_006100_020 0.0639005006 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
4 Hb_000318_150 0.0651882793 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_001300_280 0.0659500754 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
6 Hb_000035_100 0.0670939994 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000960_080 0.0695906513 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
8 Hb_003636_080 0.0697154775 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
9 Hb_000103_290 0.0709747585 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
10 Hb_001507_050 0.0718018479 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005305_100 0.0722976688 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_027506_010 0.0738002891 - - PREDICTED: cullin-4 [Jatropha curcas]
13 Hb_033642_120 0.074235349 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
14 Hb_000270_170 0.0749964367 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
15 Hb_178968_060 0.0751039093 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
16 Hb_000787_200 0.0757940433 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000373_170 0.0765049454 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
18 Hb_000034_110 0.0765436148 - - sentrin/sumo-specific protease, putative [Ricinus communis]
19 Hb_003528_050 0.0766975148 - - protein transporter, putative [Ricinus communis]
20 Hb_033312_130 0.0770968126 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000173_190 Hb_000173_190 Hb_001635_110 Hb_001635_110 Hb_000173_190--Hb_001635_110 Hb_006100_020 Hb_006100_020 Hb_000173_190--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000173_190--Hb_000318_150 Hb_001300_280 Hb_001300_280 Hb_000173_190--Hb_001300_280 Hb_000035_100 Hb_000035_100 Hb_000173_190--Hb_000035_100 Hb_000960_080 Hb_000960_080 Hb_000173_190--Hb_000960_080 Hb_178968_060 Hb_178968_060 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_001635_110--Hb_001300_280 Hb_006189_020 Hb_006189_020 Hb_001635_110--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_001635_110--Hb_003098_070 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_001300_280--Hb_178968_060 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_006588_060 Hb_006588_060 Hb_001300_280--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_001300_280--Hb_012092_050 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_001507_050 Hb_001507_050 Hb_000960_080--Hb_001507_050 Hb_003680_020 Hb_003680_020 Hb_000960_080--Hb_003680_020 Hb_000960_080--Hb_000270_170 Hb_000960_080--Hb_000059_240 Hb_000960_080--Hb_033312_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7006 16.9028 16.6259 13.3965 7.38379 5.62565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81297 8.14757 6.03341 14.4593 13.9157

CAGE analysis