Hb_048476_080

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig48476: 51414-58311
Sequence    

Annotation

kegg
ID rcu:RCOM_0053570
description two-component sensor histidine kinase bacteria, putative
nr
ID XP_002533196.1
description two-component sensor histidine kinase bacteria, putative [Ricinus communis]
swissprot
ID Q940D0
description Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2
trembl
ID B9T4M7
description Two-component sensor histidine kinase bacteria, putative OS=Ricinus communis GN=RCOM_0053570 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr14 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44944: 51548-58230 , PASA_asmbl_44945: 51548-58230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_080 0.0 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
2 Hb_000844_050 0.045800605 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_003661_010 0.0508351234 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
4 Hb_000103_290 0.055846152 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
5 Hb_001507_050 0.0579933075 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_006100_020 0.0617432893 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
7 Hb_001008_130 0.0621007977 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
8 Hb_003680_020 0.0625382868 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000960_080 0.0644085063 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
10 Hb_033312_130 0.0673312681 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
11 Hb_000300_030 0.0686082166 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
12 Hb_160608_010 0.0699660165 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
13 Hb_000035_100 0.0709199853 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_008165_020 0.0713978605 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
15 Hb_003124_270 0.0739420887 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
16 Hb_000664_090 0.0741162681 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
17 Hb_001141_240 0.0753405086 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
18 Hb_000270_170 0.0757027102 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
19 Hb_006210_010 0.0763584839 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
20 Hb_000358_220 0.0766264114 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_048476_080 Hb_048476_080 Hb_000844_050 Hb_000844_050 Hb_048476_080--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_001507_050 Hb_001507_050 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_003124_270 Hb_003124_270 Hb_000844_050--Hb_003124_270 Hb_000844_050--Hb_003661_010 Hb_003680_020 Hb_003680_020 Hb_000844_050--Hb_003680_020 Hb_000809_250 Hb_000809_250 Hb_000844_050--Hb_000809_250 Hb_000844_050--Hb_001507_050 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_003661_010--Hb_003680_020 Hb_001414_010 Hb_001414_010 Hb_003661_010--Hb_001414_010 Hb_016172_030 Hb_016172_030 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080 Hb_000960_080 Hb_000960_080 Hb_001507_050--Hb_000960_080 Hb_001507_050--Hb_003680_020 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_008165_020 Hb_008165_020 Hb_001507_050--Hb_008165_020 Hb_001507_050--Hb_160608_010 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_001008_130--Hb_033312_130 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_003680_020 Hb_001008_130--Hb_000960_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30001 15.7993 13.4136 14.3881 7.05883 5.87448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09563 5.9794 6.26851 12.0145 19.9429

CAGE analysis