Hb_060980_010

Information

Type -
Description -
Location Contig60980: 36353-49800
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01740g
description POPTRDRAFT_756576; hypothetical protein
nr
ID XP_011004968.1
description PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
swissprot
ID Q94F62
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2
trembl
ID B9GZS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01740g PE=3 SV=2
Gene Ontology
ID GO:0016021
description brassinosteroid insensitive 1-associated receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50895: 36360-49728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060980_010 0.0 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
2 Hb_016172_030 0.0433949501 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
3 Hb_027506_010 0.0442334508 - - PREDICTED: cullin-4 [Jatropha curcas]
4 Hb_019840_030 0.0494891729 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
5 Hb_065500_020 0.050423315 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
6 Hb_000409_050 0.0600605283 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
7 Hb_000001_170 0.0607100267 - - amino acid transporter, putative [Ricinus communis]
8 Hb_021165_010 0.061048359 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
9 Hb_000103_290 0.0613728861 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
10 Hb_002357_070 0.0622772097 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_002749_060 0.0629415903 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
12 Hb_011819_020 0.0640000234 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
13 Hb_007245_020 0.064585299 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
14 Hb_000702_090 0.065407716 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
15 Hb_001221_180 0.0671813023 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_001085_290 0.0673492945 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_001587_030 0.0678244964 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
18 Hb_001817_170 0.0682153471 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
19 Hb_002890_130 0.0684041519 - - tip120, putative [Ricinus communis]
20 Hb_004037_020 0.0687881576 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_060980_010 Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_027506_010 Hb_027506_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_027506_010 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_027506_010--Hb_000409_050 Hb_027506_010--Hb_065500_020 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_019840_030--Hb_027506_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_000409_050--Hb_016172_030 Hb_012286_040 Hb_012286_040 Hb_000001_170--Hb_012286_040 Hb_102698_010 Hb_102698_010 Hb_000001_170--Hb_102698_010 Hb_000001_170--Hb_002749_060 Hb_000011_270 Hb_000011_270 Hb_000001_170--Hb_000011_270 Hb_000238_030 Hb_000238_030 Hb_000001_170--Hb_000238_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.56469 13.128 13.4509 15.5386 9.7243 8.45201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09296 6.15638 7.28561 17.2785 14.7109

CAGE analysis