Hb_002596_060

Information

Type -
Description -
Location Contig2596: 46010-53150
Sequence    

Annotation

kegg
ID rcu:RCOM_0424410
description hypothetical protein
nr
ID XP_002533844.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6H5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0424410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26904: 47491-49796 , PASA_asmbl_26905: 49909-52100 , PASA_asmbl_26906: 49972-50317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002596_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019840_030 0.0504506945 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
3 Hb_004837_280 0.0719275266 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
4 Hb_000122_080 0.0802885628 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
5 Hb_060980_010 0.0809480969 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_002259_080 0.0833365136 - - protein transport protein sec23, putative [Ricinus communis]
7 Hb_000161_210 0.087859919 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
8 Hb_001307_240 0.0881088409 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
9 Hb_016734_020 0.0884401672 - - sugar transporter, putative [Ricinus communis]
10 Hb_000979_220 0.0893167148 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
11 Hb_007747_170 0.0900578999 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_000836_460 0.0902534364 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
13 Hb_065500_020 0.0904995015 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
14 Hb_006829_100 0.0917683282 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021165_010 0.0922193597 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
16 Hb_005333_050 0.0938830993 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
17 Hb_000243_300 0.0940218172 - - catalytic, putative [Ricinus communis]
18 Hb_004096_110 0.0946325478 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
19 Hb_007185_040 0.0952007759 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
20 Hb_021576_010 0.0955224885 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_002596_060 Hb_002596_060 Hb_019840_030 Hb_019840_030 Hb_002596_060--Hb_019840_030 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_060980_010 Hb_060980_010 Hb_002596_060--Hb_060980_010 Hb_002259_080 Hb_002259_080 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_019840_030--Hb_060980_010 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_001733_030 Hb_001733_030 Hb_000122_080--Hb_001733_030 Hb_006501_010 Hb_006501_010 Hb_000122_080--Hb_006501_010 Hb_006829_100 Hb_006829_100 Hb_000122_080--Hb_006829_100 Hb_000122_080--Hb_019840_030 Hb_000122_080--Hb_002259_080 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_060980_010--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_000635_030 Hb_000635_030 Hb_002259_080--Hb_000635_030 Hb_141069_010 Hb_141069_010 Hb_002259_080--Hb_141069_010 Hb_000130_020 Hb_000130_020 Hb_002259_080--Hb_000130_020 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360 Hb_003038_040 Hb_003038_040 Hb_000161_210--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_000161_210--Hb_007982_030 Hb_001821_150 Hb_001821_150 Hb_000161_210--Hb_001821_150 Hb_000352_300 Hb_000352_300 Hb_000161_210--Hb_000352_300 Hb_001703_050 Hb_001703_050 Hb_000161_210--Hb_001703_050 Hb_030982_010 Hb_030982_010 Hb_000161_210--Hb_030982_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18139 3.30333 4.22875 4.38283 2.74799 2.35538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84828 1.36699 1.84214 6.5654 2.82532

CAGE analysis