Hb_002391_360

Information

Type -
Description -
Location Contig2391: 219572-222906
Sequence    

Annotation

kegg
ID cit:102615950
description prolyl 4-hydroxylase subunit alpha-1-like
nr
ID XP_006425363.1
description hypothetical protein CICLE_v10026208mg [Citrus clementina]
swissprot
ID F4JZ24
description Probable prolyl 4-hydroxylase 10 OS=Arabidopsis thaliana GN=P4H10 PE=2 SV=1
trembl
ID V4RV41
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026208mg PE=4 SV=1
Gene Ontology
ID GO:0005788
description probable prolyl 4-hydroxylase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25074: 220565-221774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_360 0.0 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
2 Hb_002259_080 0.0911382912 - - protein transport protein sec23, putative [Ricinus communis]
3 Hb_000365_030 0.0970606301 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_000130_020 0.0983410802 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
5 Hb_006501_010 0.0993608758 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
6 Hb_005730_010 0.1009730267 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
7 Hb_000635_030 0.1026389332 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
8 Hb_001733_030 0.1073942611 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
9 Hb_003436_020 0.1075388768 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
10 Hb_000579_070 0.1082877652 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
11 Hb_019641_030 0.1089625154 - - chitin elicitor receptor kinase 1 [Chrysanthemum boreale]
12 Hb_116349_070 0.1111317777 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
13 Hb_000237_190 0.113781475 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
14 Hb_000600_060 0.1144511498 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_133702_030 0.1145253884 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
16 Hb_000120_280 0.1152157071 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_000261_240 0.1173545005 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
18 Hb_000844_070 0.1198272253 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
19 Hb_005723_020 0.1199181365 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007380_140 0.120712135 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_360 Hb_002391_360 Hb_002259_080 Hb_002259_080 Hb_002391_360--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_002391_360--Hb_000365_030 Hb_000130_020 Hb_000130_020 Hb_002391_360--Hb_000130_020 Hb_006501_010 Hb_006501_010 Hb_002391_360--Hb_006501_010 Hb_005730_010 Hb_005730_010 Hb_002391_360--Hb_005730_010 Hb_000635_030 Hb_000635_030 Hb_002391_360--Hb_000635_030 Hb_002259_080--Hb_000635_030 Hb_141069_010 Hb_141069_010 Hb_002259_080--Hb_141069_010 Hb_002259_080--Hb_000130_020 Hb_002596_060 Hb_002596_060 Hb_002259_080--Hb_002596_060 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000365_030--Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_000130_020--Hb_141069_010 Hb_000994_020 Hb_000994_020 Hb_006501_010--Hb_000994_020 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_023313_040 Hb_023313_040 Hb_005730_010--Hb_023313_040 Hb_025668_010 Hb_025668_010 Hb_005730_010--Hb_025668_010 Hb_000958_080 Hb_000958_080 Hb_005730_010--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_005730_010--Hb_007413_040 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000635_030--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8054 5.17795 7.71846 8.57455 9.55895 5.59526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81591 2.97004 2.19612 9.60946 3.15872

CAGE analysis