Hb_178968_050

Information

Type -
Description -
Location Contig178968: 30721-33871
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G126100g
description hypothetical protein
nr
ID XP_012067448.1
description PREDICTED: probable serine incorporator [Jatropha curcas]
swissprot
ID A7S4N4
description Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1
trembl
ID A0A067L0E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26944 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17253: 30768-33931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_050 0.0 - - PREDICTED: probable serine incorporator [Jatropha curcas]
2 Hb_000608_230 0.071649793 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
3 Hb_000130_020 0.0718968239 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
4 Hb_140049_080 0.0775807724 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
5 Hb_000365_030 0.0790924433 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
6 Hb_002686_040 0.0791715817 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
7 Hb_004109_370 0.0794025096 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_004645_070 0.0807597135 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
9 Hb_007894_160 0.082256714 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
10 Hb_061878_010 0.0845969464 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
11 Hb_000243_130 0.0877242916 - - hypothetical protein M569_10795, partial [Genlisea aurea]
12 Hb_002475_040 0.0885932963 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
13 Hb_000260_780 0.0903742336 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
14 Hb_009252_050 0.0908801262 - - protein binding protein, putative [Ricinus communis]
15 Hb_007747_170 0.0920460323 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_000635_030 0.0923217969 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
17 Hb_000037_220 0.0924968105 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
18 Hb_000680_110 0.0936687374 - - Endosomal P24A protein precursor, putative [Ricinus communis]
19 Hb_011202_020 0.0941991613 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
20 Hb_041327_010 0.0949351288 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_178968_050 Hb_178968_050 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_000130_020 Hb_000130_020 Hb_178968_050--Hb_000130_020 Hb_140049_080 Hb_140049_080 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_004109_370 Hb_004109_370 Hb_178968_050--Hb_004109_370 Hb_005402_040 Hb_005402_040 Hb_000608_230--Hb_005402_040 Hb_000608_230--Hb_140049_080 Hb_000331_580 Hb_000331_580 Hb_000608_230--Hb_000331_580 Hb_003216_090 Hb_003216_090 Hb_000608_230--Hb_003216_090 Hb_000823_030 Hb_000823_030 Hb_000608_230--Hb_000823_030 Hb_000635_030 Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_140049_080--Hb_001318_020 Hb_000365_030--Hb_000130_020 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000365_030--Hb_000635_030 Hb_103747_020 Hb_103747_020 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_005723_020 Hb_005723_020 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.9777 176.918 114.443 167.422 172.635 127.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.444 33.0215 86.3728 190.639 106.234

CAGE analysis