Hb_000635_030

Information

Type -
Description -
Location Contig635: 6751-19077
Sequence    

Annotation

kegg
ID rcu:RCOM_1080760
description mannosyl-oligosaccharide glucosidase, putative (EC:3.2.1.106)
nr
ID XP_002514933.1
description mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
swissprot
ID F4HTM3
description Mannosyl-oligosaccharide glucosidase GCS1 OS=Arabidopsis thaliana GN=GCS1 PE=1 SV=1
trembl
ID B9RMG4
description Mannosyl-oligosaccharide glucosidase, putative OS=Ricinus communis GN=RCOM_1080760 PE=4 SV=1
Gene Ontology
ID GO:0004573
description mannosyl-oligosaccharide glucosidase gcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51894: 6799-6903 , PASA_asmbl_51895: 7009-19168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_030 0.0 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
2 Hb_000130_020 0.0519722529 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
3 Hb_141069_010 0.0593698138 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001668_010 0.0635285892 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
5 Hb_000120_280 0.0650826066 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_002259_080 0.0718902069 - - protein transport protein sec23, putative [Ricinus communis]
7 Hb_004267_040 0.0779358763 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
8 Hb_134362_010 0.0809886084 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
9 Hb_000243_300 0.0837194921 - - catalytic, putative [Ricinus communis]
10 Hb_003436_020 0.0847228941 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
11 Hb_000608_230 0.0859395828 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
12 Hb_007657_020 0.0880999466 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
13 Hb_000365_030 0.088533042 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
14 Hb_004109_370 0.0890391149 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_133702_030 0.089449732 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
16 Hb_009252_050 0.089889204 - - protein binding protein, putative [Ricinus communis]
17 Hb_002311_290 0.0907738124 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
18 Hb_002686_040 0.0912875289 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
19 Hb_000011_100 0.0915746561 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_007894_160 0.091719459 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_000635_030 Hb_000635_030 Hb_000130_020 Hb_000130_020 Hb_000635_030--Hb_000130_020 Hb_141069_010 Hb_141069_010 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000120_280 Hb_000120_280 Hb_000635_030--Hb_000120_280 Hb_002259_080 Hb_002259_080 Hb_000635_030--Hb_002259_080 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040 Hb_178968_050 Hb_178968_050 Hb_000130_020--Hb_178968_050 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_000130_020--Hb_141069_010 Hb_000243_300 Hb_000243_300 Hb_141069_010--Hb_000243_300 Hb_000258_110 Hb_000258_110 Hb_141069_010--Hb_000258_110 Hb_141069_010--Hb_002259_080 Hb_039946_050 Hb_039946_050 Hb_141069_010--Hb_039946_050 Hb_001673_050 Hb_001673_050 Hb_001668_010--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_005542_140 Hb_005542_140 Hb_001668_010--Hb_005542_140 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_000120_280--Hb_004267_040 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_002259_080--Hb_000130_020 Hb_002596_060 Hb_002596_060 Hb_002259_080--Hb_002596_060 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360 Hb_004267_040--Hb_000011_100 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00279 9.45989 7.78713 9.48111 11.7246 6.33067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32686 4.04293 4.30703 11.7032 6.72938

CAGE analysis