Hb_001009_320

Information

Type -
Description -
Location Contig1009: 198677-203154
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10200g
description POPTRDRAFT_776216; zinc finger family protein
nr
ID XP_012079909.1
description PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IF52
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0015s10200g PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00549: 198624-201904 , PASA_asmbl_00550: 198691-200142 , PASA_asmbl_00551: 200153-203118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_320 0.0 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
2 Hb_000006_010 0.0437123884 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000477_050 0.0599131987 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
4 Hb_000522_170 0.0639816461 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
5 Hb_000120_280 0.0646281618 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_015807_050 0.0686561573 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
7 Hb_000313_220 0.0695404499 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_002301_300 0.0725716631 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
9 Hb_002326_040 0.07326961 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_021419_030 0.073419263 - - hypothetical protein glysoja_023295 [Glycine soja]
11 Hb_033286_010 0.0734897433 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
12 Hb_002849_130 0.0739647676 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_002989_020 0.0746449511 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
14 Hb_000803_270 0.0752723937 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
15 Hb_000258_070 0.0757821811 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
16 Hb_000152_360 0.0759854038 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53 [Jatropha curcas]
17 Hb_000336_210 0.0762568389 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
18 Hb_002728_080 0.0764450657 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000139_260 0.0765079735 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
20 Hb_013399_020 0.0771947812 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_320 Hb_001009_320 Hb_000006_010 Hb_000006_010 Hb_001009_320--Hb_000006_010 Hb_000477_050 Hb_000477_050 Hb_001009_320--Hb_000477_050 Hb_000522_170 Hb_000522_170 Hb_001009_320--Hb_000522_170 Hb_000120_280 Hb_000120_280 Hb_001009_320--Hb_000120_280 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220 Hb_000139_260 Hb_000139_260 Hb_000006_010--Hb_000139_260 Hb_023313_040 Hb_023313_040 Hb_000006_010--Hb_023313_040 Hb_000803_270 Hb_000803_270 Hb_000006_010--Hb_000803_270 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_000317_470 Hb_000317_470 Hb_000522_170--Hb_000317_470 Hb_001221_080 Hb_001221_080 Hb_000522_170--Hb_001221_080 Hb_021419_030 Hb_021419_030 Hb_000522_170--Hb_021419_030 Hb_000522_170--Hb_000139_260 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_109980_010 Hb_109980_010 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070 Hb_000313_220--Hb_002849_130 Hb_000313_220--Hb_000976_140 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_005730_040 Hb_005730_040 Hb_000313_220--Hb_005730_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65434 5.47037 7.61602 9.01682 8.86786 5.69976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17616 5.91903 5.13425 7.36811 6.33764

CAGE analysis