Hb_109980_010

Information

Type -
Description -
Location Contig109980: 4298-15924
Sequence    

Annotation

kegg
ID rcu:RCOM_0122800
description hypothetical protein
nr
ID XP_012088572.1
description PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZL91
description Integrator complex subunit 7 OS=Gallus gallus GN=INTS7 PE=2 SV=1
trembl
ID B9T1M5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0122800 PE=4 SV=1
Gene Ontology
ID GO:0045491
description arm repeat superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02948: 4291-4392 , PASA_asmbl_02949: 5919-7659 , PASA_asmbl_02950: 7681-8794 , PASA_asmbl_02951: 9008-16005 , PASA_asmbl_02952: 9008-16005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109980_010 0.0 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
2 Hb_015807_050 0.0492952172 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
3 Hb_006483_110 0.0618525502 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
4 Hb_006501_090 0.0647448631 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
5 Hb_001655_030 0.0648724338 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
6 Hb_007657_010 0.0658522795 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000935_010 0.0680882243 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
8 Hb_002263_020 0.0701892013 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
9 Hb_001269_230 0.07027826 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
10 Hb_003861_050 0.0718104391 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
11 Hb_005291_050 0.0724383107 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
12 Hb_007416_330 0.0726889837 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
13 Hb_002013_020 0.0733777878 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
14 Hb_000343_250 0.0744660175 - - PREDICTED: protein CASC3 [Jatropha curcas]
15 Hb_001379_110 0.0748817762 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
16 Hb_001005_030 0.0750121645 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_000214_050 0.0753613715 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
18 Hb_001902_030 0.0754471346 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
19 Hb_005867_070 0.0756027441 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000890_060 0.0760639027 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_109980_010 Hb_109980_010 Hb_015807_050 Hb_015807_050 Hb_109980_010--Hb_015807_050 Hb_006483_110 Hb_006483_110 Hb_109980_010--Hb_006483_110 Hb_006501_090 Hb_006501_090 Hb_109980_010--Hb_006501_090 Hb_001655_030 Hb_001655_030 Hb_109980_010--Hb_001655_030 Hb_007657_010 Hb_007657_010 Hb_109980_010--Hb_007657_010 Hb_000935_010 Hb_000935_010 Hb_109980_010--Hb_000935_010 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_006501_090--Hb_001655_030 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_006501_090--Hb_000039_150 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_003645_060 Hb_003645_060 Hb_001655_030--Hb_003645_060 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_007657_010--Hb_004097_070 Hb_004994_010 Hb_004994_010 Hb_000935_010--Hb_004994_010 Hb_000165_040 Hb_000165_040 Hb_000935_010--Hb_000165_040 Hb_001089_110 Hb_001089_110 Hb_000935_010--Hb_001089_110 Hb_000617_180 Hb_000617_180 Hb_000935_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_000935_010--Hb_002784_020 Hb_002375_010 Hb_002375_010 Hb_000935_010--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89908 5.81376 8.0264 7.10062 7.65439 8.78627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2143 6.14295 6.89084 6.43422 7.72404

CAGE analysis