Hb_007657_010

Information

Type -
Description -
Location Contig7657: 13907-30641
Sequence    

Annotation

kegg
ID rcu:RCOM_0762330
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002532933.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O61122
description Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1
trembl
ID B9T3W4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0762330 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57405: 16471-30702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007657_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001902_030 0.057886615 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
3 Hb_008221_180 0.0592717603 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
4 Hb_000346_060 0.0600691854 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
5 Hb_002263_020 0.0610001491 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
6 Hb_000343_250 0.062144196 - - PREDICTED: protein CASC3 [Jatropha curcas]
7 Hb_004097_070 0.0636137616 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
8 Hb_109980_010 0.0658522795 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
9 Hb_001001_080 0.0674324803 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
10 Hb_000029_050 0.06833232 - - expressed protein, putative [Ricinus communis]
11 Hb_004100_080 0.0699546082 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004970_190 0.0711663982 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_004963_030 0.0712751981 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000205_190 0.0724851244 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_019280_030 0.0726177134 - - -
16 Hb_002013_020 0.0738083152 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
17 Hb_015807_050 0.0741294095 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
18 Hb_188063_020 0.0750612815 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000958_140 0.0754151456 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
20 Hb_007943_110 0.0759076004 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_007657_010 Hb_007657_010 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_007657_010--Hb_004097_070 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080 Hb_008221_180--Hb_000343_250 Hb_009486_060 Hb_009486_060 Hb_008221_180--Hb_009486_060 Hb_008221_180--Hb_000346_060 Hb_001671_010 Hb_001671_010 Hb_008221_180--Hb_001671_010 Hb_000317_050 Hb_000317_050 Hb_008221_180--Hb_000317_050 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_002263_020--Hb_004109_080 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000343_250--Hb_004963_030 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_004097_070--Hb_000200_380 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5062 7.69694 8.84827 8.17021 10.9359 10.3365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28806 9.24911 8.203 6.62194 12.1501

CAGE analysis