Hb_003517_040

Information

Type -
Description -
Location Contig3517: 62524-73096
Sequence    

Annotation

kegg
ID rcu:RCOM_0423930
description Magnesium and cobalt efflux protein corC, putative
nr
ID XP_012070978.1
description PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
swissprot
ID Q84R21
description DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH2 PE=2 SV=2
trembl
ID B9T467
description Magnesium and cobalt efflux protein corC, putative OS=Ricinus communis GN=RCOM_0423930 PE=4 SV=1
Gene Ontology
ID GO:0016614
description duf21 domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36533: 62717-71046 , PASA_asmbl_36534: 63342-64884 , PASA_asmbl_36535: 71066-72438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_040 0.0 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
2 Hb_000976_140 0.0562951479 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
3 Hb_001789_110 0.0573454536 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000138_100 0.0576264827 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
5 Hb_003734_010 0.0576722427 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
6 Hb_000441_090 0.0584578413 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
7 Hb_002263_020 0.0590248831 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
8 Hb_007426_110 0.0596867795 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
9 Hb_000890_060 0.060955015 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
10 Hb_000227_220 0.0615472398 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
11 Hb_015807_050 0.0629175451 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_000347_430 0.0629776398 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
13 Hb_005730_040 0.0630223735 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
14 Hb_000406_200 0.063746911 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
15 Hb_000313_220 0.0643768992 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_001814_030 0.0647151321 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
17 Hb_002205_030 0.0652067534 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
18 Hb_002989_020 0.0653560812 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
19 Hb_004452_110 0.0653617951 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
20 Hb_102698_010 0.0655442817 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003517_040 Hb_003517_040 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_005730_040 Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_000976_140--Hb_000313_220 Hb_002849_130 Hb_002849_130 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_012760_100 Hb_012760_100 Hb_003734_010--Hb_012760_100 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_002027_080 Hb_002027_080 Hb_000441_090--Hb_002027_080 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22124 7.96351 6.9118 8.63209 7.12867 7.76808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60827 6.76032 5.39975 9.12636 10.8649

CAGE analysis