Hb_188281_040

Information

Type -
Description -
Location Contig188281: 24623-33257
Sequence    

Annotation

kegg
ID vvi:100242486
description transcription initiation factor TFIID subunit 12
nr
ID XP_012066476.1
description PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
swissprot
ID Q9SR71
description Transcription initiation factor TFIID subunit 12 OS=Arabidopsis thaliana GN=TAF12 PE=1 SV=1
trembl
ID A0A067L2R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23666 PE=4 SV=1
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18606: 24658-33164 , PASA_asmbl_18607: 28441-28649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188281_040 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
2 Hb_001789_110 0.0609719363 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000406_200 0.0623046208 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
4 Hb_003117_030 0.0644700464 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
5 Hb_005489_040 0.0658712524 - - PREDICTED: cullin-1 [Jatropha curcas]
6 Hb_000409_050 0.0666893371 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
7 Hb_000363_310 0.0666905009 - - DNA topoisomerase type I, putative [Ricinus communis]
8 Hb_017469_110 0.0667692319 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
9 Hb_073171_070 0.0668581958 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
10 Hb_000720_050 0.0676465499 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
11 Hb_001862_130 0.0689505356 - - Protein FRIGIDA, putative [Ricinus communis]
12 Hb_008387_020 0.0696204379 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
13 Hb_000749_010 0.0712005349 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
14 Hb_005260_030 0.0718182816 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
15 Hb_183510_020 0.0723500385 - - coated vesicle membrane protein, putative [Ricinus communis]
16 Hb_001377_190 0.0728838049 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
17 Hb_007413_010 0.0733189262 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
18 Hb_001925_060 0.0735319853 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
19 Hb_003517_040 0.0746577589 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
20 Hb_000347_430 0.074902947 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]

Gene co-expression network

sample Hb_188281_040 Hb_188281_040 Hb_001789_110 Hb_001789_110 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_003117_030--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_003117_030--Hb_005489_040 Hb_003117_030--Hb_001789_110 Hb_001925_060 Hb_001925_060 Hb_003117_030--Hb_001925_060 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_005489_040--Hb_007413_010 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11924 6.17529 6.20618 5.33144 5.60786 4.44141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31378 5.12409 4.2479 8.17464 10.2649

CAGE analysis