Hb_000111_170

Information

Type -
Description -
Location Contig111: 196696-200718
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006157mg
description hypothetical protein
nr
ID XP_012068674.1
description PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03383: 196680-200550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_170 0.0 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
2 Hb_000085_210 0.0554585708 - - DNA topoisomerase type I, putative [Ricinus communis]
3 Hb_000363_310 0.0627577296 - - DNA topoisomerase type I, putative [Ricinus communis]
4 Hb_001221_440 0.06389163 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
5 Hb_030414_040 0.064162499 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
6 Hb_005288_070 0.0661241281 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_183433_010 0.0679350094 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_000120_210 0.068540979 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
9 Hb_003747_120 0.0692572414 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
10 Hb_000749_010 0.0697197596 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
11 Hb_001720_040 0.0702189562 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001089_030 0.0754342541 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_000375_390 0.0756323437 - - poly-A binding protein, putative [Ricinus communis]
14 Hb_000336_020 0.0757225285 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
15 Hb_000567_070 0.0760395967 - - autophagy protein, putative [Ricinus communis]
16 Hb_000661_120 0.0768734729 - - cap binding protein, putative [Ricinus communis]
17 Hb_007283_010 0.0772577972 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
18 Hb_000035_090 0.077279102 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
19 Hb_031284_010 0.0780977384 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
20 Hb_007248_030 0.0784427348 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_170 Hb_000111_170 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_000795_040 Hb_000795_040 Hb_000085_210--Hb_000795_040 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_017469_110 Hb_017469_110 Hb_000085_210--Hb_017469_110 Hb_001439_220 Hb_001439_220 Hb_000085_210--Hb_001439_220 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_065525_080 Hb_065525_080 Hb_001221_440--Hb_065525_080 Hb_000019_190 Hb_000019_190 Hb_001221_440--Hb_000019_190 Hb_001635_110 Hb_001635_110 Hb_001221_440--Hb_001635_110 Hb_171900_090 Hb_171900_090 Hb_001221_440--Hb_171900_090 Hb_002014_010 Hb_002014_010 Hb_001221_440--Hb_002014_010 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_005288_070--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_005288_070--Hb_000457_230 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6711 22.2725 29.7478 19.6715 18.2725 18.2671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3313 19.5685 10.2268 19.1602 27.3006

CAGE analysis