Hb_001439_220

Information

Type -
Description -
Location Contig1439: 187506-190931
Sequence    

Annotation

kegg
ID rcu:RCOM_0537530
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative
nr
ID XP_002530001.1
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
swissprot
ID Q94A21
description SPX domain-containing protein 4 OS=Arabidopsis thaliana GN=SPX4 PE=2 SV=1
trembl
ID B9SVI2
description Xenotropic and polytropic murine leukemia virus receptor ids-4, putative OS=Ricinus communis GN=RCOM_0537530 PE=4 SV=1
Gene Ontology
ID GO:0016036
description spx domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11607: 188276-188576 , PASA_asmbl_11608: 187667-190853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_220 0.0 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
2 Hb_033642_120 0.0662970673 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
3 Hb_000868_120 0.0665109238 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
4 Hb_000085_210 0.0722179404 - - DNA topoisomerase type I, putative [Ricinus communis]
5 Hb_010287_020 0.0749831019 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
6 Hb_000445_060 0.0819665977 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
7 Hb_002435_100 0.0833681302 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
8 Hb_000173_190 0.0837339308 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005288_070 0.0858730356 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
10 Hb_000160_140 0.0863959216 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
11 Hb_000723_030 0.0868017059 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
12 Hb_000661_120 0.0870927758 - - cap binding protein, putative [Ricinus communis]
13 Hb_000676_330 0.0874150615 - - protein with unknown function [Ricinus communis]
14 Hb_000230_460 0.0883455335 - - Speckle-type POZ protein, putative [Ricinus communis]
15 Hb_002110_160 0.0890350964 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
16 Hb_000975_210 0.0892780543 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
17 Hb_000003_400 0.090008724 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000111_170 0.0903444342 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
19 Hb_001635_210 0.0907686126 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
20 Hb_000282_090 0.0909400005 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_220 Hb_001439_220 Hb_033642_120 Hb_033642_120 Hb_001439_220--Hb_033642_120 Hb_000868_120 Hb_000868_120 Hb_001439_220--Hb_000868_120 Hb_000085_210 Hb_000085_210 Hb_001439_220--Hb_000085_210 Hb_010287_020 Hb_010287_020 Hb_001439_220--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_001439_220--Hb_000445_060 Hb_002435_100 Hb_002435_100 Hb_001439_220--Hb_002435_100 Hb_033642_120--Hb_000868_120 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_000661_120 Hb_000661_120 Hb_033642_120--Hb_000661_120 Hb_033642_120--Hb_010287_020 Hb_000868_120--Hb_000445_060 Hb_000868_120--Hb_010287_020 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_000868_120--Hb_000661_120 Hb_000795_040 Hb_000795_040 Hb_000085_210--Hb_000795_040 Hb_000111_170 Hb_000111_170 Hb_000085_210--Hb_000111_170 Hb_005288_070 Hb_005288_070 Hb_000085_210--Hb_005288_070 Hb_000085_210--Hb_000676_330 Hb_017469_110 Hb_017469_110 Hb_000085_210--Hb_017469_110 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_010287_020--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_007254_020 Hb_007254_020 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_002435_100--Hb_000230_460 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7802 35.1906 36.6407 16.7265 15.2239 13.3151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8445 21.1612 10.5396 21.9166 28.0973

CAGE analysis