Hb_000868_120

Information

Type -
Description -
Location Contig868: 195674-200107
Sequence    

Annotation

kegg
ID tcc:TCM_037459
description RED family protein isoform 1
nr
ID XP_012077125.1
description PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
swissprot
ID O48713
description Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana GN=SMU2 PE=1 SV=1
trembl
ID A0A067KG35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07544 PE=4 SV=1
Gene Ontology
ID GO:0005634
description suppressor of mec-8 and unc-52 protein homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61054: 195691-200034 , PASA_asmbl_61055: 199119-199401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_120 0.0 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
2 Hb_000445_060 0.0492301602 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
3 Hb_010287_020 0.0559066798 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_033642_120 0.0571582476 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
5 Hb_000676_330 0.0652998917 - - protein with unknown function [Ricinus communis]
6 Hb_001439_220 0.0665109238 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
7 Hb_000661_120 0.0665511275 - - cap binding protein, putative [Ricinus communis]
8 Hb_000510_360 0.0705906911 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
9 Hb_000975_210 0.0711682914 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
10 Hb_002110_160 0.0713680094 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
11 Hb_003711_010 0.0715177859 - - isopropylmalate synthase, putative [Ricinus communis]
12 Hb_000996_020 0.0723347878 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_002768_050 0.0727785018 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
14 Hb_023226_070 0.0732594485 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000373_170 0.0734932305 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
16 Hb_000207_200 0.0748230787 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
17 Hb_000282_090 0.0750347854 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_001300_010 0.0750367961 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_060094_020 0.0752157212 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
20 Hb_003470_040 0.0758589849 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000868_120 Hb_000868_120 Hb_000445_060 Hb_000445_060 Hb_000868_120--Hb_000445_060 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_000868_120--Hb_000661_120 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_010287_020--Hb_033642_120 Hb_010287_020--Hb_000445_060 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_033642_120--Hb_001439_220 Hb_033642_120--Hb_000661_120 Hb_000206_160 Hb_000206_160 Hb_000676_330--Hb_000206_160 Hb_000676_330--Hb_002768_050 Hb_000676_330--Hb_000445_060 Hb_000676_330--Hb_000996_020 Hb_027506_010 Hb_027506_010 Hb_000676_330--Hb_027506_010 Hb_000085_210 Hb_000085_210 Hb_001439_220--Hb_000085_210 Hb_001439_220--Hb_010287_020 Hb_001439_220--Hb_000445_060 Hb_002435_100 Hb_002435_100 Hb_001439_220--Hb_002435_100 Hb_000661_120--Hb_000996_020 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0399 46.1576 47.7224 23.672 23.0975 17.3279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9717 19.4104 17.1014 28.128 30.4276

CAGE analysis