Hb_000110_350

Information

Type -
Description -
Location Contig110: 363440-369106
Sequence    

Annotation

kegg
ID pmum:103341470
description ubiquitin receptor RAD23d-like
nr
ID XP_012462057.1
description PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
swissprot
ID Q84L31
description Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2
trembl
ID A0A0D2VC55
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G076900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin receptor rad23c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03085: 363497-369169
cDNA
(Sanger)
(ID:Location)		 001_H24.ab1: 363497-363889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_350 0.0 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
2 Hb_170077_010 0.0436766908 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
3 Hb_000179_190 0.0453304745 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
4 Hb_003929_210 0.0482613833 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_002768_050 0.0506135435 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_000445_060 0.0506645769 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
7 Hb_000996_020 0.0548239259 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
8 Hb_004517_020 0.0554104619 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
9 Hb_003939_060 0.0561138516 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000373_170 0.060505237 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
11 Hb_005403_010 0.06265649 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
12 Hb_005834_040 0.0637057051 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
13 Hb_000977_300 0.0643061947 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_000358_220 0.06452043 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
15 Hb_002461_020 0.0647829107 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
16 Hb_000260_760 0.0648852866 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
17 Hb_003918_030 0.0656342118 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
18 Hb_000008_240 0.0664799341 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000030_140 0.0680505224 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_005305_100 0.0686575027 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_350 Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000179_190--Hb_000445_060 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_000179_190--Hb_170077_010 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_003929_210--Hb_000996_020 Hb_003929_210--Hb_000358_220 Hb_003929_210--Hb_002768_050 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2803 95.2869 70.9522 60.0864 40.6002 38.7331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3816 24.601 31.134 47.2912 63.9574

CAGE analysis